Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Apar_0991 |
Symbol | |
ID | 8413863 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Atopobium parvulum DSM 20469 |
Kingdom | Bacteria |
Replicon accession | NC_013203 |
Strand | - |
Start bp | 1117448 |
End bp | 1121233 |
Gene Length | 3786 bp |
Protein Length | 1261 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 645022580 |
Product | Pyrrolo-quinoline quinone |
Protein accession | YP_003180011 |
Protein GI | 257784794 |
COG category | [S] Function unknown |
COG ID | [COG1520] FOG: WD40-like repeat |
TIGRFAM ID | |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.620303 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCAAAA AGGCGCTTAA TAGCCTTTTC TCCATACTTT TAGTGCTTGC ACTCTTACCA GCGCCTGCAT TTGCAGAAGC AGCGGGGGAG TTGACTACTG CAGCAACTTC TTCATCAGAG ACTGTCCTTA CTGCTAATGA CAACGCTTCT AGTGAGACAG CTGACACATC TGGAACAACT ACAACCTCTA AAGAGACGGG TTCTGGTGCT GCAGCAACTA CTGATGAGAC TGCCTATCCA CATAAAACAC TAGATCAGGC TGTAGAAGCA CTGACCAATT CTTTCTATAA GCCTAAACCT CGTTATGGCG TAGATACTAA CCTCAACACC ATGGTTGCAG AAGAGTTGCG TCGTATTGGT GCTGGAGAAG TTAACGTTAG AGTGGCATCT GTTCAGATGT CTTCGACAGC TTCGTATGCT CACGCTGGTG TTTCTACTGA CTTCGCAACT AATGGTTCTA TTGAGTACTT CTGGATGGAT GCCGCTGGCT TAACTAACCA GAAAAGTACT CTTATTTTGC GTCAGGCTAA AGTAACCTTT GAACTTTCCA AGGATGGAAA GACTGCTCAG TATACCTGCA ACGTTTTAAT TCCTTGGGAT GAGGCAAAAT CTCAGGTGCA GCTGAGTGAT GTATCTCAAA ATCTTGCTCC ATCATTTGCG ACAGGACAAA ATGAATCTTC CGTAACTTCA AACTTTACCC TTCCACATAA GCTTATTTCT GTTGATGGAC ATTTGCTTTC ATGGTCTAAG GTAACTTGGA CCAGTTCTGA CACGTCTACC GTTCGTGTTG ATGGTTATGG TACTGAACCT TATAAGGCAA CGGTTATACG TGGTATTCGT GATAAACAGG TAACGCTGAC TGCAAACGTT TCTTTGAGCG GCTCCGATGC CCCTCAGACA AGCTATCAGC GATCCTTTAC CATAACGGTT CCAGGTGATC CTTCGGCTAT TAGTGATGCT CAGAATAATC TGTTGAGGCG TATCAACAGG CGTTTCTCGG TAGCAGCCAT TAAAGATGTG TATACCAATC ACTCAATTAA TGCTCAGGCT GTCACAGACG ATCTTCAGAT GCCTACACCA AAGAATTTTG GTTTGGACGG AAAGCGCTAT CAATTTACTT ACACTTCCTC TAATGCTGCA GTTACGTTTA ATGGTTACCG AGCGACGGTA TATCAGCCTC TTCCTTCTGC CTCTGCACAG CAGGTAGATA TCACCCTAAC TGTTACTGAT AAGGAGAATC CCGAGGTAAC AGCCTCTAAG ACTCTTACGC TTACGGTAAG CCCCCTCAAT CAATCTGACA TTGACGCAGA GCTTTCTTTG ATGAAGGAGT CAAAGGCTCA TTTCTGGGAT GCTCTTGCTA CTCCTTCTGG CCAGCAGAAC AAACAAGACA GCATTTCTGA GTCCCTGGCT ACACCAAATA AGTTCTATCG TGCAACAGAC GGTTCTTTGA CCTGGTCTTA TGACGTTAAT AATACCGATA AGACCGCAAG CGGTATTGTA CCTTCTGAGT TTTCTACATA TGATCCAATG GGCCCTGCTA ATCAGGCACG CACATATAGT TCTTCTCAAC CAAAAATCAT TCAGAACGAG AATCTTGTTC TGGCGCAGAC TCCTGAGTAC AACACGTCTG TTACAGTTTC GGCACTTCTT TCAAGTGCAC GTTATTCTCG CTATGCAAGC CTGTATCCAG ATAATGAGCA GTTCCAGGCT CTTGCTAATC AGAAGGTCTC TGCCACTTTT ACTGTGAAGG GCGAGAAGGG CGCTCGATCT GCAGAGCAAA ACTTAGATTC AAGTCAGCTT GTTTCCGTTA CCCTTTCCGT AGTGGGTCTT GATAAAGATG GTAAGCCTCA GCATTGGGCT CCTACGCAGA CCATTGAGGT TCGCAAGGGT TCAACTGCTG ATAAGGTAAC GTATGATTAC CTGAAGAATA ATGGCTTAAC ATACAGTGCG GATAGTGGTT TTCTATCTTC TATTACGTCT CCTGCGCAGG GTCTTACGCT TGCAACAACA CAGGTAAATG GCGCCTTCAA GTGGTGGCAG CTCTTTGTGA ACGGCCAGCT TTCGGACAAG ATGGCAAACA ACGTTACCTT AGACAAAAAC ACTACTATTA CCTGGACATA TGGTGGTCAG AATAGCTCCA TTCCAACTCC TCAAAATGAG CTGGTTATTA ATCCATTTGC TGAGCACCCT AATTACGAGG CATCATGGAG CGGTTTTGGC AGCGGAAACA GCTCTACTAC CACCCAGAAC ACTCCAATTA ATTCTGCGGC TTTGCGCTGG AGTGTGACTG AGGGCACTCA GAATGTACCT GGATTCATTT CTGACCAGGT AATTGTTAAA GATACCATCT ATTACGTGAG TGGTTCTACT CTCAAAGCAG TTGACGCCGC AACGGGAAGT CTTATTGCTG AGGCGCAGAT TGGTTCTACA GTTTCGTACT TTGCACGACC TCTATACGTT AATGGCATGA TTGTTGTTGC TACTGATGAT GGATGTCTTA CTGCTTTCTC GGCAACAACT ATGGAGTGCA TCTGGAAGAC AGAACCACTT GATACTGCCA ATACACTACA GTCTGTTTCT AGTTTGACTG TTAATAACGG CACCATTTTG GCTGAGTTTA CCAAGATGAG TGGCTTTGAT GCTGCCGGTG GTTACATGAT TGCTGTTGAT GCTGCTACTG GTGCGCTTCG TTGGAAGCAG GAGGCACAAC CTGCAAATAC TCCTGGAACA ACCCCTGGTC AGCCTTCAGG GTATTACTGG TCTGGCGCAG CTGCTTCTGG CTCTGACTTT GTGATTGGAG ATGAGTCTTC CTCAGCTAGA CTCATCAATG GCACAACTGG CGCCATTGAG GCTGAGCTTA ATCTTGGCTC ACCAATTCGT GCAGGTATTG TCCCTGTTTC TGTTGATCAA AATGGTAATG GAACCTATCT TGCTGTAACC AGAAATGATG GTACATTGCA TCTTATTAGG AGAAACGGTT CTTCTCTTGT TGAAGAGAAG CGGGTTAAAT TTGCAGCAGA GTCTACTTCC ACACCAACAA TCAGCGGTTC TAATGTCTTT GTTAACGGTG TTGATGCCGA GGGTTACGGA ACTATCTCCG TAATTTCTCT TGACACGTTT ACCGTGACTG ACCAGGCACG TGCTGGCAAA GGTAAGTCTC AGAGCACGCC TCTTGTTTCT GTTCAGCAAA GCGGCACCTA TGCATATTTC ACTGTAAATG GACTGCCTGG TGGCGTGTGG GTATACAAGT TGGGCACTGG TCGAGCAGCT CAGATTTACA CTCCCGATAA AGATCATCAG AACTACACTA CGTCGTCAGT TATTGCAGAC TTTGCGGGCA ACCTTTACTA CACCAATGAC TCTGGTACGC TTTTCTCGCT TATTAATCAG AAACCATCTG GCGAGAATAC CCAGCCATCT GGTGATATTT CTAACAGGAC AGATATCACA TCCACAGATG CGCCAGCTCA AGACTCTTCA TCTCCGGCGG CGCATGAAAG TTTCTCAGCT ACTCCCACAA ATGCAGGTGA GGAGGTCACA CAAGCCCCAT CTGAGAATGA GACTGCAGAT ACCAGCTCTG ACAAGAAGCA ACTTCCACAG ACTGAATATG TAAACAAGGA AACTGCCGCC CCACGACAGG GATCCTCTGC GCCTACCATT CCGCTTTTGA GTATCTTTGG TTTTTTTGGT TCTGCAGCAG TCCTTGCAGT ATTTGTAGCG TTACTTAAGA AAGAAACCGC TGCAATTCAC CATGTTTCCA ATGGCAGAGG CAAGGTGAAC AAGTGA
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Protein sequence | MIKKALNSLF SILLVLALLP APAFAEAAGE LTTAATSSSE TVLTANDNAS SETADTSGTT TTSKETGSGA AATTDETAYP HKTLDQAVEA LTNSFYKPKP RYGVDTNLNT MVAEELRRIG AGEVNVRVAS VQMSSTASYA HAGVSTDFAT NGSIEYFWMD AAGLTNQKST LILRQAKVTF ELSKDGKTAQ YTCNVLIPWD EAKSQVQLSD VSQNLAPSFA TGQNESSVTS NFTLPHKLIS VDGHLLSWSK VTWTSSDTST VRVDGYGTEP YKATVIRGIR DKQVTLTANV SLSGSDAPQT SYQRSFTITV PGDPSAISDA QNNLLRRINR RFSVAAIKDV YTNHSINAQA VTDDLQMPTP KNFGLDGKRY QFTYTSSNAA VTFNGYRATV YQPLPSASAQ QVDITLTVTD KENPEVTASK TLTLTVSPLN QSDIDAELSL MKESKAHFWD ALATPSGQQN KQDSISESLA TPNKFYRATD GSLTWSYDVN NTDKTASGIV PSEFSTYDPM GPANQARTYS SSQPKIIQNE NLVLAQTPEY NTSVTVSALL SSARYSRYAS LYPDNEQFQA LANQKVSATF TVKGEKGARS AEQNLDSSQL VSVTLSVVGL DKDGKPQHWA PTQTIEVRKG STADKVTYDY LKNNGLTYSA DSGFLSSITS PAQGLTLATT QVNGAFKWWQ LFVNGQLSDK MANNVTLDKN TTITWTYGGQ NSSIPTPQNE LVINPFAEHP NYEASWSGFG SGNSSTTTQN TPINSAALRW SVTEGTQNVP GFISDQVIVK DTIYYVSGST LKAVDAATGS LIAEAQIGST VSYFARPLYV NGMIVVATDD GCLTAFSATT MECIWKTEPL DTANTLQSVS SLTVNNGTIL AEFTKMSGFD AAGGYMIAVD AATGALRWKQ EAQPANTPGT TPGQPSGYYW SGAAASGSDF VIGDESSSAR LINGTTGAIE AELNLGSPIR AGIVPVSVDQ NGNGTYLAVT RNDGTLHLIR RNGSSLVEEK RVKFAAESTS TPTISGSNVF VNGVDAEGYG TISVISLDTF TVTDQARAGK GKSQSTPLVS VQQSGTYAYF TVNGLPGGVW VYKLGTGRAA QIYTPDKDHQ NYTTSSVIAD FAGNLYYTND SGTLFSLINQ KPSGENTQPS GDISNRTDIT STDAPAQDSS SPAAHESFSA TPTNAGEEVT QAPSENETAD TSSDKKQLPQ TEYVNKETAA PRQGSSAPTI PLLSIFGFFG SAAVLAVFVA LLKKETAAIH HVSNGRGKVN K
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