Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Apar_0446 |
Symbol | |
ID | 8413295 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Atopobium parvulum DSM 20469 |
Kingdom | Bacteria |
Replicon accession | NC_013203 |
Strand | + |
Start bp | 514746 |
End bp | 515423 |
Gene Length | 678 bp |
Protein Length | 225 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 645022014 |
Product | polar amino acid ABC transporter, inner membrane subunit |
Protein accession | YP_003179468 |
Protein GI | 257784251 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0765] ABC-type amino acid transport system, permease component |
TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.95928 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCGTCG ATAACATTTT GCTCCAAGAA GGAGTGCTAA CGCGCCTTTT TGGAGGCCTT GCAACAACGG TGTACATTGG CCTTATCTCA GTGGTGCTCT CTATTCCTCT TGGTATTCTT GTTGGACTTT TTATGACATC CAACAACAAG ATTGTTCGTA CACTTCTTCG TGTTTACCTT GAGATTGTTC GAGTTATGCC TCAGCTGGTG CTGCTCTTTG TGGTGTTCTT TGGTACTTCT GAATGGTTTG ATGTCAATTT TGATGGTATT GAGGCATCAA TTGTGGTCTT TACGTTTTGG GGAGCTGCCG AGCTTGGAGA TCTGGTAAGA GGAGCGTTGG AGTCAATTCC GGCATCTCAG TATGACGGCG CGTTTGTGCT TGGTCTTTCT CGCCAGCAGA CGTTCTTTCA GGTCATTTTG CCTCAGGCAC TTAGGCGCCT TTTACCGCCA GCCATCAATC TGATTACTCG CATGATTAAG ACGACGTCGC TTTGTAATTT GATTGGCGTG GTTGAGCTGC TTAGAGTTGG TAGTCAGATC ACCGATTTTT ATCGCTTTAT GTTCCCAACC GACGGAGCAC TTTGGATCTA TGGAGCTATT TTCTTCCTGT ATTTTGCTGC CTGCTTCCCA CTTTCGTATC TTTCACGCAG GCTTGAGAGG AGTGCCTCAC ATGAGTAA
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Protein sequence | MPVDNILLQE GVLTRLFGGL ATTVYIGLIS VVLSIPLGIL VGLFMTSNNK IVRTLLRVYL EIVRVMPQLV LLFVVFFGTS EWFDVNFDGI EASIVVFTFW GAAELGDLVR GALESIPASQ YDGAFVLGLS RQQTFFQVIL PQALRRLLPP AINLITRMIK TTSLCNLIGV VELLRVGSQI TDFYRFMFPT DGALWIYGAI FFLYFAACFP LSYLSRRLER SASHE
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