| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0142 |
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| Symbol | |
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| ID | 8412988 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | + |
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| Start bp | 161820 |
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| End bp | 162893 |
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| Gene Length | 1074 bp |
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| Protein Length | 357 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 645021712 |
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| Product | basic membrane lipoprotein |
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| Protein accession | YP_003179169 |
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| Protein GI | 257783952 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1744] Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAAGA ACGTTTCTCG TCGTAGTTTT GTGACTGGCG CAACCGGCGC TGGCGCACTT
GCAGCACTTG CAGGTCTTGC AGGCTGCAAC CAGAAGAAGG ACGACGGCGG CCAGAAGTCA
TCAGGTGAGA AGAAAAAGAA GCTCACCATG GTTACTGATA CTGGTGGTGT AAACGACCAG
TCCTTTAACC AGTCCGCTTG GGAGGGCATG ACTGAGCTCA AGGACAAGAA CGGCTGGGAT
GTCAGCTACC TTGAGTCCAA GCAGGATTCC GATTACGCAA CCAACCTTGA TAAGGCTGTT
GACGCTGAGT CTGACCTTGT TTGGGGTATT GGTTTTGCTA TGGCAGATGC AGTTGTTAAG
GCTGCTAAGG ATAACTCCAA CACCCAGTTT GCCATTATCG ACAACGCTAA TGATTCTGAG
GTTGCTAACT TGACCGGCGT AATGTTCCGC GCTCAAGAGC CTTCCTTTGT TGTTGGTTAT
ATTGCTGCTC GTACTACAAA GACTGGCAAG GTTGGCTTTG TTGGCGGCAT TTCTTCCGCA
CTTATCGACC AGTTTGAGTA TGGTTACCGC GGCGGCGTTG CTTATGCAAA CAACGAGAAC
AACACTAACG TTGAGATTTC TGCACAGTAT GCAGAGTCCT TCTCCGATGC TGCAAAGGGC
AAGGCTATTG CAAACTCTAT GTATTCCGAT GGTTGCGACG TTGTCTTCCA CGCTGCAGGC
GGCGTAGGAA CTGGCGTTAT TGAGGCAGCT AAGGACGCAA ACAAGCTTGC CATTGGTGTT
GACCGCGACC AGGCATATCT TGCTCCAGAG AATGTTTTGA CCTCCGCTCT TAAGCGCGTC
AATGTTGCTA TCGTTGAGAT TTCCGAGAAG ATTTTGAAGA ACGGCCAGAA GGGTGGTAGC
ACCATTTCTC TGGGCGCTTC CGAGGACGCT GTCGGAATTG CTGAGGATCA CCACCTCATG
GCAGACGATA CCTACAAGGC AGCTACTGCC CTTTTAGACA AGATCAAAGC TGGCTCTGTT
GTTCCTCCTG CAAGCAAGGA CGATTTGGAC AAGTACGTTA AGTCTTTGAG CTAG
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| Protein sequence | MNKNVSRRSF VTGATGAGAL AALAGLAGCN QKKDDGGQKS SGEKKKKLTM VTDTGGVNDQ
SFNQSAWEGM TELKDKNGWD VSYLESKQDS DYATNLDKAV DAESDLVWGI GFAMADAVVK
AAKDNSNTQF AIIDNANDSE VANLTGVMFR AQEPSFVVGY IAARTTKTGK VGFVGGISSA
LIDQFEYGYR GGVAYANNEN NTNVEISAQY AESFSDAAKG KAIANSMYSD GCDVVFHAAG
GVGTGVIEAA KDANKLAIGV DRDQAYLAPE NVLTSALKRV NVAIVEISEK ILKNGQKGGS
TISLGASEDA VGIAEDHHLM ADDTYKAATA LLDKIKAGSV VPPASKDDLD KYVKSLS
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