| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_0200 |
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| Symbol | |
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| ID | 6275340 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Akkermansia muciniphila ATCC BAA-835 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010655 |
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| Strand | + |
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| Start bp | 250061 |
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| End bp | 250483 |
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| Gene Length | 423 bp |
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| Protein Length | 140 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 642612246 |
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| Product | methylmalonyl-CoA epimerase |
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| Protein accession | YP_001876825 |
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| Protein GI | 187734713 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG3185] 4-hydroxyphenylpyruvate dioxygenase and related hemolysins |
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| TIGRFAM ID | [TIGR03081] methylmalonyl-CoA epimerase |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.000715247 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 56 |
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| Fosmid unclonability p-value | 0.843381 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATTCAGC AAATTGACCA TATCGGCATC GCCGTCAAGA GCCTTGACGC CACCGTCCCC
TATTACCGCG ATGCGCTCGG GCTCGGAGAG CCCCACATTG AGGAAGTTCC CACTCAAAAG
GTCCGCGTCG CCATGTTTGA CGTTGCCGGA GTCCACATCG AACTGCTCGA ACCCACCTCT
CCGGAAAGCG CTATCGCCAA GGCTATTGAG AAAAAAGGGG AAGGCATCCA CCACATCGCT
TTCAAGACCA ATGACATCGC CGGAAATATC TCCCAGGCCA AGGAAGCAGG CCTTACCGTG
CTGAACGACC CGCCCGTCCC CGGCGCTCAC AACACGCAGG TCACCTTCCT GCATCCCAAG
TGCACCTTCG GCGTCCTGAC CGAATTCTGC CAGCACCCCG GCAGCTGCGA ATGCGGCAAG
TAA
|
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| Protein sequence | MIQQIDHIGI AVKSLDATVP YYRDALGLGE PHIEEVPTQK VRVAMFDVAG VHIELLEPTS
PESAIAKAIE KKGEGIHHIA FKTNDIAGNI SQAKEAGLTV LNDPPVPGAH NTQVTFLHPK
CTFGVLTEFC QHPGSCECGK
|
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