Gene Amir_5068 details

Gene Information

• Locus tag: Amir_5068
• ID: 8329266
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Actinosynnema mirum DSM 43827
• Kingdom: Bacteria
• Replicon accession: NC_013093
• Strand: +
• Start bp: 6043618
• End bp: 6045618
• Gene Length: 2001 bp
• Protein Length: 666 aa
• Translation table: 11
• GC content: 78%
• IMG OID: 644945504
• Product: ABC transporter related
• Protein accession: YP_003102736
• Protein GI: 256379076
• COG category: [V] Defense mechanisms
• COG ID: [COG1132] ABC-type multidrug transport system, ATPase and permease components

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.427212
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGACCCGAG AGCTCCTCCC CATCGCCTCA CCGGCCCGCG TGCGCGCCGC GCTCGGCGAG 
CTGGTCGCGC CGCGCTGGAA GCTGGCGGTG GCCGCGTTCG CGGTGCTGTT CGCGGGCGCG 
GCGGTCGGCC TGGCCACCGC TCCCCTGCTC GGCCGGATCG TCGACCTGGT CGGCGCCGGG 
CTCGGAGCGG AGGCGATCAC CGGGACGGTG GTGGCGCTGG CGGGCGTGGC CGTCGTGCAG 
GGGGTGTGCG CGGCGGTCGG CGTGACGCTG GTGGCGCGGC TCGGCGAGGG CGTGCTGGCG 
CGGCTGCGGG AGCGGTTCGT GGAGCGGGCG CTGCTGCTGC CGCTGGAGCG GGTCGAGGAG 
GCGGGCGCGG GCGACCTGAC CTCGCGGGTG ACGCGGGACG TGCAGGTCGT CGCGGACGGG 
GTGCGCAACG CGCTGCCGGT GATGGCGCGG TCGGCGCTGA CGATCGGGCT GACCGTGGTC 
GGCATCGGCG TGCTGGACTG GCGGTTCCTG ATCCCGGTGC TGCTGGCCGC GCCGGTCCAG 
GCGCACACCG TGCGGTGGTA CGGCGGGCGG GCGGTGCGGC TGTACGCGGC GCAGCGGGTC 
GCGGTCGGGG CGCAGCAGCA GCAGCTGCTG GACTCGATCG GCGGCGCGGC GACGGTGCGG 
GCGTTCGGGC TGGCCGGGCG GCACGAGGAG CGGGTGCGGG AGCGGTCGCA GGAGGCGGTG 
TCGCTGGCGC TGCGCGGCAT CCGGCTGCTG ACCCGGTTCT ACGGCAGGCT CAACCTGGCC 
GAGTTCGTCG GGCTCGGCGG GCTGCTGGTG GTGGGGTTCT GGCTGGTGCA GGGCGGGTCG 
GTGACGGTCG GGGCCGCGAC GGCGGCGGCG CTGTACTTCC ACGGCCTGTT CAACCCGATC 
AACGCCGCGC TCGCGCTGGC CGACGACGCG CAGGCCGCGT CCGCGTCGCT GGCGCGGCTG 
GTGGGGGTCG CGGACGGGCG GGCGGAGGGC GAGGACCCGG AGTCGGCGAC GGGCGCGGGC 
TCGCAGGCGG GCGCCGCTTC CCGTGCGGGC GCCGGTGGTC CTGCGGGTGC CGGCGGTCTT 
GCGGGCGCCG CTTCCCGTGC GGGCACTGAT GGTCCTGTGA ACGCGGGTGG TCCCGTGAAC 
GCCGGCAGTC CTGTGAACGC CGGGACTCCG ACGATCGGCT CGGAGGACGC CGGGGTGTCG 
TTGGCCGGGG TCGGGCACGA GTACGTGGCC GGGCACCCGG TGGTGCGCGG GGTGGACCTG 
GAGGTGAAGC CCGGCGAGCG GGTGGCGCTG GTCGGGGCGT CCGGGGCGGG CAAGACCACG 
CTGGCGAAGA TCATCGCCGG GGTGCACCGG CCGACGTCCG GGACGGTGCT GGTCGGCGGG 
GCGCCGCTGG AGCGTGCGGC GCGGTCGGTC GCGCTGATCA CGCAGGAGGT GCACGTGTTC 
GCCGGGCCGC TGGTGGAGGA CCTGCGGTTG GCCCGGCCGG AGGCGTCGCC CGCGGACGTG 
GAGGAGGCGC TGGAGCGCGT GGGCGCGCTG CGGTGGGCGC GGGCGCTGCC CGAGGGGCTG 
GAGACCGTGG TCGGCGAGGG CGGGCGGCGG TTGACGGCGG CGCAGGCGCA GCAGCTCGCG 
CTGGCCAGGC TGGTGCTGGC GGACCCGCCG GTCGCGGTGC TGGACGAGGC CACGGCCGAG 
GCGGGCAGCG CGGGGGCGCG GGAGCTGGAG GTCGCGGCGG CGCGGGCCCT GGACGGGCGG 
ACGGGCCTGC TCGTGGCGCA CCGGTTGACG CAGGCGTCGG AGGCCGACCG GGTGGTGGTG 
CTGGAGGCCG GTCGGGTGGT GGAGAGCGGC ACGCACGCGG CGCTCCTGGC GGCCGGTGGG 
CGGTACGCGG CGCTGTGGGA GGCGTGGTCG GGGACGCGGA CCGGCGACCC GGCCCCGGCC 
GCCGGCAGCA CGGCCGCGGT CCCCACTAGC ACGGCCGCGG TTCCCCTTGG CACAAACCCG 
AATCCAGGGC TTCGGCCCTG A 

 

Protein sequence

MTRELLPIAS PARVRAALGE LVAPRWKLAV AAFAVLFAGA AVGLATAPLL GRIVDLVGAG 
LGAEAITGTV VALAGVAVVQ GVCAAVGVTL VARLGEGVLA RLRERFVERA LLLPLERVEE 
AGAGDLTSRV TRDVQVVADG VRNALPVMAR SALTIGLTVV GIGVLDWRFL IPVLLAAPVQ 
AHTVRWYGGR AVRLYAAQRV AVGAQQQQLL DSIGGAATVR AFGLAGRHEE RVRERSQEAV 
SLALRGIRLL TRFYGRLNLA EFVGLGGLLV VGFWLVQGGS VTVGAATAAA LYFHGLFNPI 
NAALALADDA QAASASLARL VGVADGRAEG EDPESATGAG SQAGAASRAG AGGPAGAGGL 
AGAASRAGTD GPVNAGGPVN AGSPVNAGTP TIGSEDAGVS LAGVGHEYVA GHPVVRGVDL 
EVKPGERVAL VGASGAGKTT LAKIIAGVHR PTSGTVLVGG APLERAARSV ALITQEVHVF 
AGPLVEDLRL ARPEASPADV EEALERVGAL RWARALPEGL ETVVGEGGRR LTAAQAQQLA 
LARLVLADPP VAVLDEATAE AGSAGARELE VAAARALDGR TGLLVAHRLT QASEADRVVV 
LEAGRVVESG THAALLAAGG RYAALWEAWS GTRTGDPAPA AGSTAAVPTS TAAVPLGTNP 
NPGLRP