| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amir_4792 |
|---|
| Symbol | |
|---|
| ID | 8328990 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Actinosynnema mirum DSM 43827 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013093 |
|---|
| Strand | + |
|---|
| Start bp | 5707723 |
|---|
| End bp | 5708448 |
|---|
| Gene Length | 726 bp |
|---|
| Protein Length | 241 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 77% |
|---|
| IMG OID | 644945234 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_003102466 |
|---|
| Protein GI | 256378806 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGTCCCATC CCACTGCGCT GATCACCGGG GGCACGACCG GCATCGGCCG GGCCGTCGCC
GGGCTGCTGC ACGAGCGCGG CCACCGCGTC GTGGTCACCG GCCGCGACCC GGTGACCCTG
GAGGCGGCCC GCCGCGAGCT GCCGGACGAC GTCGTCGTCC GGCGCGCCGA CGCCCGCTCG
CTGCCCGACG CCGACCGCCT GGCCGAGGAG GTCCGCGAGC GCTTCGGCGC GCTCGACGTG
CTGCTGCTGA ACGCGGGCAT CACCCGCTCG CTGCCGTTCG AGGAGGTCGA CGAGACCGCG
TACGCCGAGG TGTTCGACGT CAACACCAGG GGGCAGCTGC TCACGCTCGC CAGGCTCCTG
CCGCTGCTCG CGGACGGCGC GTCGGTGGTG TTCACGGTCG GCGCGGGCGT GCGGTCGGGC
ATCCCCGGCG GGGCGCTCAC GGCGGCGAGC CGGGGCGCGC TGCTGAGCGC GGTCCCGTCG
CTGGCGCTGG AGCTGGCGCC GCGCCGGATC AGGGTGAACG CGGTCAGCCC TGGGCTGGTC
GACACCCCGA TCTGGGCCAA GGGCGGGCTG CCGCCCGAGG CGCTGGCCGA GTACGCGGGC
CGGGTCCCGC TGGGTCGACC GGGCACCGCG CGCGAGGTGG CCGAGGCGGT CGGCTACCTG
GTGGGCGCGG GGTACGTGAC CGGTCAGGAG CTGGTCGTGG CGGGCGGAAG CGGGCTGGGG
GCGTGA
|
|---|
| Protein sequence | MSHPTALITG GTTGIGRAVA GLLHERGHRV VVTGRDPVTL EAARRELPDD VVVRRADARS
LPDADRLAEE VRERFGALDV LLLNAGITRS LPFEEVDETA YAEVFDVNTR GQLLTLARLL
PLLADGASVV FTVGAGVRSG IPGGALTAAS RGALLSAVPS LALELAPRRI RVNAVSPGLV
DTPIWAKGGL PPEALAEYAG RVPLGRPGTA REVAEAVGYL VGAGYVTGQE LVVAGGSGLG
A
|
|---|
| |