Gene Amir_4187 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmir_4187 
Symbol 
ID8328380 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameActinosynnema mirum DSM 43827 
KingdomBacteria 
Replicon accessionNC_013093 
Strand- 
Start bp4929747 
End bp4930685 
Gene Length939 bp 
Protein Length312 aa 
Translation table11 
GC content76% 
IMG OID644944651 
Productshort chain dehydrogenase 
Protein accessionYP_003101888 
Protein GI256378228 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.977167 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCCGAACG CCATCGACCT CACCCTCCCC GACCTCACCG GACGGCGCGC CCTCGTCACC 
GGGGCGAGCG ACGGCGTCGG CCTGGGCATC GCCGCCAGGC TCGCGGCGGC GGGCGCCGAG 
GTGCTGCTGC CCGTCCGCAA CCAGCGCAAG GGCGAGGCCG CGCTCGCCGA GATCCGCGAG 
CGGGCCCCCG GCGCCACCGC CTCCCTGCGC CCGCTCGACC TGTCCTCCCT GGACTCGGTC 
GCCGCGCTCG GCGAGGCGCT GCGCGCCGAG GGCAGGCCGA TCCACCTCCT GGTCAACAAC 
GCGGGCGTGA TGACCCCACC CGAGCGGCAG ACCACCGCCG ACGGCTTCGA GCTCCAGCTC 
GGCACCAACC ACCTGGGCCA CTTCGCCCTG GTCGCCCACC TGATGCCGCT GCTCAGGGCC 
GGGCGGGCGC GGGTGACCAC GCAGCTGAGC GTCGCGGCGA ACCAGGGCGC GATCAACTGG 
GCCGACCTGA ACTGGGAGCG CTCGTACAGC GGGCGGCGCG CCTACAGCCA GTCGAAGATC 
GCGGCAGGGC TGTTCGGCCT GGAGCTGGCC AGGCGCAGCC GCGCGGGCGG CTGGGGCGTG 
ACCAGCACCC TGTCCCACCC CGGCATCGCA CCCACGAGCC TGCTGGCCGC GCGCCCCGAA 
CTGGGCCGGT CGGGCGACAC GGCGGGCAGG CGCCTGATCC GCCTGCTGGC GTCCACCGGC 
CTGCTCGTCG GCACCCCGGA CACGGCGGGC CTGCCCGCGC TCCTCGCCGC GACCACCCCG 
GACCCCGCGC CCTTCTACGG CCCCGGCGGC CCCGGCAACC TCGGCGGCCC ACCCGTCGCG 
CAGGAGCTGT ACTCGCGCCT GCGCGACAAG GACGACGAGG CCCGGCGGGT GTGGGAGGTG 
TCGGAGGAGC TGACTCGGGT GAGCTTCGCG CACGTGTGA
 
Protein sequence
MPNAIDLTLP DLTGRRALVT GASDGVGLGI AARLAAAGAE VLLPVRNQRK GEAALAEIRE 
RAPGATASLR PLDLSSLDSV AALGEALRAE GRPIHLLVNN AGVMTPPERQ TTADGFELQL 
GTNHLGHFAL VAHLMPLLRA GRARVTTQLS VAANQGAINW ADLNWERSYS GRRAYSQSKI 
AAGLFGLELA RRSRAGGWGV TSTLSHPGIA PTSLLAARPE LGRSGDTAGR RLIRLLASTG 
LLVGTPDTAG LPALLAATTP DPAPFYGPGG PGNLGGPPVA QELYSRLRDK DDEARRVWEV 
SEELTRVSFA HV