Gene Amir_2870 details

Gene Information

• Locus tag: Amir_2870
• ID: 8327059
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Actinosynnema mirum DSM 43827
• Kingdom: Bacteria
• Replicon accession: NC_013093
• Strand: +
• Start bp: 3306210
• End bp: 3312644
• Gene Length: 6435 bp
• Protein Length: 2144 aa
• Translation table: 11
• GC content: 73%
• IMG OID: 644943403
• Product: YD repeat protein
• Protein accession: YP_003100644
• Protein GI: 256376984
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG3209] Rhs family protein
• TIGRFAM ID: [TIGR01643] YD repeat (two copies)

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGACGCCGG GGCCGGGTGC GGGTGTGGTG GACACGGGGC TGACCGAGTC GGCGACCGAG 
CTGAGGGCCT CCCTCACGAA CGGCTCCTGG CTCGGTGACG CCCCCAGCGC GGGCCAGGAC 
GACCTGCCTT CGCTGGGTGA GGTCTCGGAC CCGTTCAAGC CCCTCTCGCA AGCGGGCGTG 
GAGTGGTTGG TCGAGCACGT CGCCCCGCTC CAGCGCGCGC TCGACGAACT GCGCGGCGAC 
CCCGCCACCG TGACCGCGCA GGCCGAGACG TGGAGCGCCG TCGCGACGGA GCTGGCCACC 
ATCGCGAGCG ACCTGGTCGC CGCCGTCGCC GCCGACACCA CCGCGTGGAC CGGTGAAGCG 
GCCGACAACT ACCGCGTCCG CGCCGAGCAG ACCGCGGCAC TGCTCACCGC CGCCAGCCAG 
GGTGCCCACG GCGCGTCAGG TGGTCTGCGC AAGGCAGGTG AACTGGTCGG CGCGGTCCGC 
GGCCTGGTCC GCGACGTCAT CGCCGACGCG GTGGACAACC TGGTCAAGGT CGCCCTCCAG 
ATCGTGGGCA CCGGGGGAGT GGCGGCCCCG TGGACGATCC CGCAGATCTC CCAGACCGTG 
GCCGCCACGG CCGCCCGCAT CACCGCGCTG ACCTCGAAGC TGCTCGACGC CCTCCGCAGG 
CTCACCCCGC TGCTCACGCA GACCGGCGAC CTGTTCGGCG AGGCGACGAC CGCCCTGCGC 
ACCCTGCAGA CCGCCACAGC CCCCATCCCG TCCACCACCC TGGCCGCTGC GGCGCCACTG 
CCCCCGCAGT CACCCGAGCC CAGCCAGGCA GCCGGGCCCA GCCAGTCGTC CGGTGCACCT 
CAGACGGCCG TGACCGCAGA CCAGCAGTCC GGCATGTCCC AGCCCGGAAC GCCCGGCACC 
AACAGCGACA CCCACGGTGG CAGCAACACC GACAATCCCG GCGCAGCCCT CCAGCCAGGC 
GCCGCCGACC TGGACACGCC CAGGACTGGC ACCGCCTCAC TCGGCACAGC CGAACCCGAC 
GCGTTCCGGT CGGGCGCGCC CTCCCCGAGC ACCGCCGACA CGACCAACCC CAGCGGGGCC 
TCCACCGTTC CGCAAGCTGC CGCAGCGCAG ACGGCACCCG TGCAGGCCAG TGGCGCGATG 
CAGTCCAGCG TGGCCCAGCC CTGGCTCCAG TCCGCTGACC AGTCCCTTGA GCAGCCCGTT 
CCGCAGCAGG CGGTCCAGGC TGAAGCGACC CCGGACCTGA CGCAGTCGAC CGGTGCGACG 
AGCGCTTGGC CGCCTTCGCC TGCGGAGTCC GTGTGGACCC TGCCGCCGAG CGACCCGCCC 
GTCACCCAGG TGTATGCCGA GGCCTTCGCC TGGCCCACGC CCTCTGCTGA CGCGCCGACC 
GCCACCTCGG CAGCCGAGAC GCAGTGGCCA CCGATGAGCA CCCAGCCGCC GAGCCCGACG 
TCCACGGGCG CGGACGCGTT CGCTTGGCCT CCGGGGCAGG CAGACGGCAT GACCAGTGCA 
GTTGGCACCC CGGTTGCCGA GGCGGGCTGG CCCCGTGCCG AGGGCACCAC GACCACCTCC 
AGCGCCGACC TCGCGACGGC TCCCCGCGCG GACCTCCCGA TCACCACGCG ACCGGAAGTT 
CCTGCTGGCG TGCCCGCCAG TTCGGCCTCC GACCCCGTTG GCCAGCAGGC GGCACCCCAG 
GCGGCCGGCA GCCGTCAGGG GACCACGCAC CCCGACGCTG CCAAGCAGGC CCAGGTGAAG 
CGGGAGGAAA AGCGGGGCGA ACTGCCCGCG TTCGACGCTC CCACGTTGTT GAGCGGCTCG 
TCCGCGCACA GCGGTATCCA GCCGCCTGCG CCTCCGGTGA CCACGACCGG TTCAGCTGCG 
AGCTTTGAAC CAGCCGCGTC CCAGCATCCG CCGGTTGAAC CGCCGACCCT GCGCATCGCG 
GTTTCCTCGC GCGCTACGAC CAAGAACGAG ACTACTGACC TTGGCGCCTC TGGTGGGAGT 
CCCTCGGTAG CGCCCCTTTC GGGGGAATCT GTCCCGGATG TGCCGGGGAC CGATTCTGTT 
GCTGCCAGCG CGGAGAATTC GGCATCGCCG CTTGGCGGGA CGTCCACTGC AGGAGTTTCC 
GAAGGGGCCG AGCCCACGGC TCGGGTGTCG CGCACGTCTC TGCCGTTGGT GGAGCCCGCT 
GGTGAGTCGC CGGCTGCCGC GCTTACCGCC CGTGTGTCGC GCTCTGAGCT GCAGTTGGCT 
GCGGAACCCG ACTCTGGCCC AGCCGCCGTC CCGGAGAACC CCGCCCCGGC GCCGTCCGCC 
CCTGCCGGTC GCACGATCGC CGGCGAGGCC GCCTCGCCCA AGGGCGCCCA CGACAACCCG 
TTCGCCAACC GCCCCACCCA CGGCGACCCG ATCGACGTCA CCACCGGCTG GGTCGTCCTC 
CCGCAGACCG ACGTCGACCT GGCCTCCACC CTCCCGCTGC TGCTCACCCG CACCCACGTG 
TCGCACTACC GCCTCGGCCG CTCCTTCGGT CCCACCTGGG CCTGCAGCGC CGACCAGCGC 
CTGGAGGTCG ACCCCGAGGG CGTCGCGCTC GCGGTCGAGG ACGGCACGCT GCTGCTCTAC 
CCCCACCCGG CCGACAACGC CGAGGCGCTC CCCGAGTCGG GGCCCCGCTG GCCGCTGGTG 
CGCACCGCCA CCGGCGGGTA CGCCGTGCAC CGCGCGGACC GGGACCAGAT CCTCCACTTC 
GCGCCCGGTC CGGATCGGGA GCGGCTCCTC GCCGCCATCA CGGACGCGGA CGGGCGTTGC 
GTGCAGTTCC GTCGCGACGA GCGGGGCGCG CTCGTCGAGG TCGCGCACTC CGGCGGGTAC 
CGGGTGCTCG TGGACACCGA GGACGGGCTG ATCACCGCGT ACCGGCTCGC GGGCGCGGGC 
ACCGAGGTGC TGCTCGGCGA GTTCCGCTAC GACGAGCGGC GCAACCTCGT CGCCGCGGTC 
AACTCCAGCG GGCTGCCGCT GCGGTTCGAG TACGACGACC TCGGCCGCGT CGCGCGGTAC 
GAGGACCGCA ACGGCATGTG GTACCGGTAC GCCTACGACG ACGAGGACCG GTGCACGGCG 
GCCGAGGGCG CGGGCGGGTA CCTGTCGTGC AGGCTCGACC ACGCGCCCGG ACTGACCACG 
GTCACCGACT CGCTCGGCAA CACCACGACC TACCAGGTCA ACGAGCGGTA CCAGGTGGTG 
TGCGAGACCG ACCCGACCGG CGCGCGCACG GTCAGCGAGT GGGACGCGCA CCACCGGCTG 
CTCTCGCGCA CCCGACCGCT CGGGCTCAGG ACGGCGTACC GCTACGACGA CCGCGGCGAC 
CTCGTCGAGG CTGTTCTGCC CGACGGCTCC CGTCTGCGCA CCGAGCACGA CGGCACGGGC 
AGGCCCGTGG TCATCACCGA CCCGGACGGG GCGGTGTGGC GGCGCGAGTA CGGGCCCAAT 
GGCGCGCTCA TCGCCGTTGT CGACCCTATG GGCGCGCGCA CCACGTGCAC CTATGACGAG 
GGCGGTGACC TGGTCGAGGT CACCGACGCG AGCGGTGCCA CGACGCACTA CGAGGTGAAC 
TCACTCGGCC TGGTCGAATC GGTCACCGAT CCCATGGGCG GCACGACCCG CTACGAGTAC 
GATGAGCTCG GCCGCCGCGC TGTCGTCATC GACCCCGCGG GTGGGCGCAC CCGGTTCACC 
TGGACCCCTG AGGGCGGGCT CGCGGGACGC GTCGACCCCG ACGGGGCGCG CTCCGTCCTG 
CGCCGCGACG GCGAGGGCAA CCTGCGGGAG CACACCGACG CCACGGGCGC GGTGACCACG 
ATCGAGGTGG GCCCCTTCGA CCTGCCCGTC GCCGAGGTCC GCCCGGACGG CTCGCGGCTG 
GAGTTCCGCT ACGACACCGA GCTGCGCCCG GTCGCCGTCG TCAACGAGCA CGGCCAGGAG 
TGGCGGTACA CCTACGACTC CAGGGGCCAC CTGGTGTCCG AGGTGGACTT CGACCAGCGC 
ATCACCACCT ACGTGTGGGA CCAGGCCGGC CGGTTGCACG GGCACGCCAA CGAGCGGGGC 
GAGAGCGTCA TGCTCGACCT CGACCCGCGC GACCGCGTCG TCGCCGTGCA CACCGCGCAG 
GGCCGCACCG ACCTGGCCTA CGACCCGGTC GGCAGGCTGC TGCGCGCGAA GGGACCCGAC 
GCCGACCTGG TCTTCACCTA CGACCCGTGC GGGCGGGTGC TCAGCGAGTC GGTCGACGGC 
CGGGTGCTGG AGTCCCGGTA CGACGTGCTG GGGCGCAGGG TCACGCGGCG CACCCCGTCC 
GGGGCGTTGA GCGTGTGGGC CTACGACCTG CTGGGCCGTC CCACCGCGTT GCGCGCGGCG 
GGGCGCACCA CGCGGTTCAG CTTCGACGCG GCGGGGCGCG AGGTCGAGCG CAGGGTGGAC 
GACGGCGTGC TGGTGGCCCA GGTGTGGGAC GAGGTGGACC GGCTGCGCTC GCAGACCGTG 
GTCACCGGCC TGCGCTCCAC CACGCCCGCC CTGGCCCAGC GCCGCACCTA CGGCTACCGG 
CCGGACGGCA AGCTCGTGTC GGTGTACGAC CAGGTCACCG GCGGTCAGGT GCTGGACCTG 
GACGAGGTCG GCCGAGTGCT GGCCGTGCGC GGCCCCTCGG GCACCGAGGT CTACCAGTAC 
GACCGCACCG GGAACGTCGT CCACGCCCAC TGGTCCGGCT CCGAACCGGG CGCGGGTCCG 
CGCGAGCACG ACCTCATGCG GGTGACGCGA GCGGGCGACC TGGCCTTCAC GTACGACGAG 
GCGGGCCGCA CCTCCAGCCG TTCGGTGCAG CGCCCGGACG GCGGCGTGGA CACCTGGGAG 
TTCGAGTGGT CCGCCCAGGA CCGCCTGCTG TCGGCCCGCA CCCCGAACGG CTCCCTGTGG 
CGCTACGGCT ACGACGCCCT CGGCCGCCGG GTGTGGAAGA AGCGCATGGC GGACGACGGC 
GTGACCCCGG TGGAACGCGT CGACCTGATG TGGGACGGCG CGGCTCCGGC GGAGCAGTTC 
ACGGGCGCCG AGTCCCTGGT GTGGGACCAC GCCCCGAGCA CCGGGCACGT GGTGACCCAG 
ACCGAGCGTT CACGGGTGTT GGCCGGGACG CGGTCCCTGC CTCCGCAGGG TGCTGCGGCG 
CAGCAGGCGA CGACCGGGCC CGCTGGGGCT GTGGGGTCCG CAGGTTCTGC GCAGGGACAG 
CCCAACTACG CCGCCCGTCT CGGCCAAGGC AGCCGGAGCG GGGAGGGCGA TCAGGTCGAG 
CGCCTCGAGT TGCGAGGCGA GGGCGATCAC TTCGGCCAGG GGAACCACCC CCACCCCGAC 
CAGGGGAACC ACCCCCACCC CGACCAGGGG GACGACCCTG GCCAGGGCAG CCACGTCAAC 
CGGACTGGAC ACGCCGATCA GGCTGGACAC GCCGATCAGG CTGGACACGC CGATCAGGCT 
GGGCATGTCG ATCAGGTTGG ACATGCCGAC CAGGGTGGAT ACGCCGACCA GGGTGGGCGC 
GTCGACCAGA GCGGACACGG TGGCCAGGCG GGGCGAGTTG ATCATGGTGG GCGTACCGAG 
CAGGTCAGTC GTGCTGAGCT GATCGGTGGT GTCGAGCGTT CGAGGCACGG TGAGCCCGGC 
GGTCGTGTTG AGCAGCAGGG GGTTCGGGCC GAGCAGGGCG TGGCCCGTGG GGAACTGGGG 
GAAGCGGGCG GTCAGTGGGT TGACCGTCGG TTCCTAGCCG TGGTCACCGA TCTGGTTGGT 
GCGCCTGCGG ACCTCGTTGA CCCGGACATC GGGTCGATCC TGCCGAAGCG GCCCGCGACC 
TTGTGGGGGG TGTCCTCCGG GCACTCGTGG ACGCCGTTGC GCTTTCCCGG TCAGCACCAC 
GACGCGGAGA CCGGTCTGCA CTACAACGTG CACCGCTACT ACGACCCGGC CACCGGGCGC 
TACCTGACCA GGGACCCATT GGGGCTGGCT CCTGCGGCCA ACCCGTGGAC CTACGCGGAC 
AACCCCACGG CTGCGGTCGA CCCGGTGGGG CTGGTTCCGT GCTCGCCCCT GTCCGGTCGT 
GCGGTGAGCG GCTACCTGAG CGGGTGGGCG CCGCCGGTGG GGCGGTTCGG GGCTGCGTCT 
CCCGAGCGTC TGCTGCCGTC TGCGAGCACG CCGTTTCCGC AGCGCGGGTA CGGCGTGGGT 
GAGGTTGGGC GTACGCATCC GGCGCACGCT GAGCTTGGAC CCTGGCATTC AAGGGCCGGT 
AATTCAAGGG CCGGTAATTC AAGGGCTGGG AATTCACGGG TTGGGAATTC GCGGGTTGGG 
CAGTCAGTGA CCGGGCGGTC GTGGGCGGGC ATCCCCGGTG CGAGTACCCC AGATATGGGG 
GAGCCGTCTG TGGTGGCGGC GCCTATGGCG GGGACCTGCG GGTCGCGTTT GCAGGAACTG 
GCTGACCGGC ACCAGCGTGA TCTGTACGGG GACACCACGT CCTCCGGGAA CCATCGGAGT 
GGAGACGAGC GGTAG 

 

Protein sequence

MTPGPGAGVV DTGLTESATE LRASLTNGSW LGDAPSAGQD DLPSLGEVSD PFKPLSQAGV 
EWLVEHVAPL QRALDELRGD PATVTAQAET WSAVATELAT IASDLVAAVA ADTTAWTGEA 
ADNYRVRAEQ TAALLTAASQ GAHGASGGLR KAGELVGAVR GLVRDVIADA VDNLVKVALQ 
IVGTGGVAAP WTIPQISQTV AATAARITAL TSKLLDALRR LTPLLTQTGD LFGEATTALR 
TLQTATAPIP STTLAAAAPL PPQSPEPSQA AGPSQSSGAP QTAVTADQQS GMSQPGTPGT 
NSDTHGGSNT DNPGAALQPG AADLDTPRTG TASLGTAEPD AFRSGAPSPS TADTTNPSGA 
STVPQAAAAQ TAPVQASGAM QSSVAQPWLQ SADQSLEQPV PQQAVQAEAT PDLTQSTGAT 
SAWPPSPAES VWTLPPSDPP VTQVYAEAFA WPTPSADAPT ATSAAETQWP PMSTQPPSPT 
STGADAFAWP PGQADGMTSA VGTPVAEAGW PRAEGTTTTS SADLATAPRA DLPITTRPEV 
PAGVPASSAS DPVGQQAAPQ AAGSRQGTTH PDAAKQAQVK REEKRGELPA FDAPTLLSGS 
SAHSGIQPPA PPVTTTGSAA SFEPAASQHP PVEPPTLRIA VSSRATTKNE TTDLGASGGS 
PSVAPLSGES VPDVPGTDSV AASAENSASP LGGTSTAGVS EGAEPTARVS RTSLPLVEPA 
GESPAAALTA RVSRSELQLA AEPDSGPAAV PENPAPAPSA PAGRTIAGEA ASPKGAHDNP 
FANRPTHGDP IDVTTGWVVL PQTDVDLAST LPLLLTRTHV SHYRLGRSFG PTWACSADQR 
LEVDPEGVAL AVEDGTLLLY PHPADNAEAL PESGPRWPLV RTATGGYAVH RADRDQILHF 
APGPDRERLL AAITDADGRC VQFRRDERGA LVEVAHSGGY RVLVDTEDGL ITAYRLAGAG 
TEVLLGEFRY DERRNLVAAV NSSGLPLRFE YDDLGRVARY EDRNGMWYRY AYDDEDRCTA 
AEGAGGYLSC RLDHAPGLTT VTDSLGNTTT YQVNERYQVV CETDPTGART VSEWDAHHRL 
LSRTRPLGLR TAYRYDDRGD LVEAVLPDGS RLRTEHDGTG RPVVITDPDG AVWRREYGPN 
GALIAVVDPM GARTTCTYDE GGDLVEVTDA SGATTHYEVN SLGLVESVTD PMGGTTRYEY 
DELGRRAVVI DPAGGRTRFT WTPEGGLAGR VDPDGARSVL RRDGEGNLRE HTDATGAVTT 
IEVGPFDLPV AEVRPDGSRL EFRYDTELRP VAVVNEHGQE WRYTYDSRGH LVSEVDFDQR 
ITTYVWDQAG RLHGHANERG ESVMLDLDPR DRVVAVHTAQ GRTDLAYDPV GRLLRAKGPD 
ADLVFTYDPC GRVLSESVDG RVLESRYDVL GRRVTRRTPS GALSVWAYDL LGRPTALRAA 
GRTTRFSFDA AGREVERRVD DGVLVAQVWD EVDRLRSQTV VTGLRSTTPA LAQRRTYGYR 
PDGKLVSVYD QVTGGQVLDL DEVGRVLAVR GPSGTEVYQY DRTGNVVHAH WSGSEPGAGP 
REHDLMRVTR AGDLAFTYDE AGRTSSRSVQ RPDGGVDTWE FEWSAQDRLL SARTPNGSLW 
RYGYDALGRR VWKKRMADDG VTPVERVDLM WDGAAPAEQF TGAESLVWDH APSTGHVVTQ 
TERSRVLAGT RSLPPQGAAA QQATTGPAGA VGSAGSAQGQ PNYAARLGQG SRSGEGDQVE 
RLELRGEGDH FGQGNHPHPD QGNHPHPDQG DDPGQGSHVN RTGHADQAGH ADQAGHADQA 
GHVDQVGHAD QGGYADQGGR VDQSGHGGQA GRVDHGGRTE QVSRAELIGG VERSRHGEPG 
GRVEQQGVRA EQGVARGELG EAGGQWVDRR FLAVVTDLVG APADLVDPDI GSILPKRPAT 
LWGVSSGHSW TPLRFPGQHH DAETGLHYNV HRYYDPATGR YLTRDPLGLA PAANPWTYAD 
NPTAAVDPVG LVPCSPLSGR AVSGYLSGWA PPVGRFGAAS PERLLPSAST PFPQRGYGVG 
EVGRTHPAHA ELGPWHSRAG NSRAGNSRAG NSRVGNSRVG QSVTGRSWAG IPGASTPDMG 
EPSVVAAPMA GTCGSRLQEL ADRHQRDLYG DTTSSGNHRS GDER