Gene Afer_0576 details

Gene Information

• Locus tag: Afer_0576
• ID: 8322635
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidimicrobium ferrooxidans DSM 10331
• Kingdom: Bacteria
• Replicon accession: NC_013124
• Strand: +
• Start bp: 580736
• End bp: 582745
• Gene Length: 2010 bp
• Protein Length: 669 aa
• Translation table: 11
• GC content: 73%
• IMG OID: 644951714
• Product: TrwC relaxase
• Protein accession: YP_003109203
• Protein GI: 256371379
• TIGRFAM ID: [TIGR02686] conjugative relaxase domain, TrwC/TraI family

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.230411
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGACTCA CTGGGATTCG ACGGGGTCTC GCCTACTACG CACGTGCTGA GCTCGCGGAT 
GAGCCGTACG CGCCCCGGGC GTTGCTCGGG AGCGGATGGC GAGAGTATCC GCACGCGGCA 
GCGCTCGCGC TCGACGAGCT GGTGCTCGAA CCCGCCCCGC GCACGCTGAT CCACGCGGTC 
GATCTCACCA TCGCTGCCCC CAAGGACGTC TCGGTCGTCT GGGGTCTCGC CGCCGAGCCC 
TTTGCCGAGG CCGTGGCCGA GGCCCATCGA GGCGCGGTGG CCGACGTCGT CACGTGGCTC 
GAGCGCCTTG ACCTCGCCCG TGTGGTGGAC GGGGAGGCGG TCCCCGCCAG CGGCGTGCGC 
GGGGTCGGCG CGCACCATCG CTTGTCGCGC GCTGGTGAGC CCCACCTGCA CACCCACGTC 
GTCCTCGCCA ACGCGATCGA GGTCGGCGGG CAGGTAGCGC CCCTCGACCA TGGGCGCCTG 
CGGCGAGTGT TGCCGGCCCT CGAGCTCGGG TATCGGGTCG AGCTTGCTGC TCGGTTGCGT 
CGTCTCGGTC TCGTCGTGGA CGGCGATGGC CTCGGGCGAT GGGCGGTCCG CGGCCTCGAT 
CGTCGGGTGG CCGATGCCTT CTCGACCAGG CGCAGCGAGG TGCTCGCCCA GGCGGGCTCG 
ACCGCCTCGG CCCGAGCTCG TCAGGTGGCG GCACTCGCAT CTCGACGAGG GTGGGCCGAG 
GGACCCGTCG ACCTAGTGAA CAGGCGCGAG CGATGGCGCG AGGCGGCACG ACGCGAGCGT 
CGCGACGGGC CCGGCGAGCG CGGTGCGGTC GCTGCGACCG CCCAGGCCAA CCGTCATGGA 
GAGCCGATCC GTATCGCCGA CCCGTTCTTC GCGGAGTTCT CCTGGCAGGC CCGCGCTGTG 
CTCGATGCCG GCCAGGGCCT CGGCGACCTG GTGGCAGCGA GCCTCCGAGC GGCCGTCGGA 
CCGGCTCGGG CGCGCGGGTT GCTCATCGGC GCTCGGATCC GGGCTGCGGG GAGCGAGCTC 
GCCCTCGATG GTTCGCTCGT GCGTCGCTAC GGAGCGCTGC CGCTGGCCGA TCGACTGGCG 
CTCGCGGGCA TCGACCTCAC GCGCCCCATC GTCGAGGTGT CGAGTCGCGA TGCCGTGCGG 
ATGGCGGACG AGCTGCGGCG TGCGACCGGG CGAGAGCACG TGCGCGTGGT CGCACGGAGC 
GATGCCGAGG CCGCCCTGCT CCAGCGCCTC GGGGCGTTCC GCGATGGCCG CCATCCCGCC 
CGGGTCGTCG TGGATGCCGT CCATCGTGCC CCGAGTGACC TGCGTGCCCT CGTGACGAGT 
CCGGAACGGA ACCTTCTCGT CGAGGTGCGT CGTCGGCCCG TCGTGCCGTC TCGATCCTCC 
CTGTCGCTCC AGCGTGACGG TCGTCGCATC GAGCTCTGCG CCGATCTCGA GACCGCGCTC 
GAACGCTGCG GCGCCTCCGT CGCCGAGGTG CTTGGGCGCG GTGAGGACGT GTGGCCGGTG 
GCGGTCGTCC CGGACACTGC GTACGCACGG CAGCTCCGAC GCGTGGTGGC ACGTGCGTTC 
GGGGTCGATC CGCGCTCCCC GGTTCCTGGA GAGCCGGTCC TCGTGCCACG GACTGGGCGA 
GGCCGCGTCG TCGACGTGTC GCGCGATCGG GTGACGGTCG AGACGGGGGG CGCCCGGATC 
GACGTCGCCG CGAGCGAGGT GGTACCGCTC GCCATCGCGA CCGAGGGGAG GGCTCCGATC 
GCCTTGGGGC CCGACCTCCA GCGGGGGGTC GAGGTGTCTG TAGTCGTGGC GCCGGAGCTC 
GAGCGGTTCG TCGCGACTTG CCGAGCGCTC GGGATGGATC CGCGGCGGAT CGAGGCTGCT 
CCGCCACGCG AACTGCTGAC CGATCCGACC GCCCGAGCGC TGTGGCGTCA AGCCCGCGGG 
TTGCATCGCT CACTGCTCGG GCGGCTCGAG CTCGGCGAGC GGACTCGTGA GGTCGATCTC 
CCGGGTCTCG ACCGGGGCCG GTGGCGTTGA 

 

Protein sequence

MRLTGIRRGL AYYARAELAD EPYAPRALLG SGWREYPHAA ALALDELVLE PAPRTLIHAV 
DLTIAAPKDV SVVWGLAAEP FAEAVAEAHR GAVADVVTWL ERLDLARVVD GEAVPASGVR 
GVGAHHRLSR AGEPHLHTHV VLANAIEVGG QVAPLDHGRL RRVLPALELG YRVELAARLR 
RLGLVVDGDG LGRWAVRGLD RRVADAFSTR RSEVLAQAGS TASARARQVA ALASRRGWAE 
GPVDLVNRRE RWREAARRER RDGPGERGAV AATAQANRHG EPIRIADPFF AEFSWQARAV 
LDAGQGLGDL VAASLRAAVG PARARGLLIG ARIRAAGSEL ALDGSLVRRY GALPLADRLA 
LAGIDLTRPI VEVSSRDAVR MADELRRATG REHVRVVARS DAEAALLQRL GAFRDGRHPA 
RVVVDAVHRA PSDLRALVTS PERNLLVEVR RRPVVPSRSS LSLQRDGRRI ELCADLETAL 
ERCGASVAEV LGRGEDVWPV AVVPDTAYAR QLRRVVARAF GVDPRSPVPG EPVLVPRTGR 
GRVVDVSRDR VTVETGGARI DVAASEVVPL AIATEGRAPI ALGPDLQRGV EVSVVVAPEL 
ERFVATCRAL GMDPRRIEAA PPRELLTDPT ARALWRQARG LHRSLLGRLE LGERTREVDL 
PGLDRGRWR