| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Afer_0272 |
|---|
| Symbol | |
|---|
| ID | 8322326 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidimicrobium ferrooxidans DSM 10331 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013124 |
|---|
| Strand | - |
|---|
| Start bp | 276607 |
|---|
| End bp | 281163 |
|---|
| Gene Length | 4557 bp |
|---|
| Protein Length | 1518 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644951420 |
|---|
| Product | NAD-glutamate dehydrogenase |
|---|
| Protein accession | YP_003108914 |
|---|
| Protein GI | 256371090 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2902] NAD-specific glutamate dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGAAG CTGGTACTGG GCGTCCAGAA ACGGCGTCCC TCTTGTCATC GGTCCGCAGA
CATTCTGGCG CCGTGCCGTC GCACGCTGGC GCCCTGGAAC ACTTCGTCGC GAGCCTCGCG
CGCCACCTCG ACGACGAGGA GACCAGCGCG CTCACCACCG AGCGCATCGG CGTCGCGGTC
GCGGCCCTCT TCGATGCGCT CACGAACGCC AAGGGCTCCG ACCGCTGCAT CGTCGAGATC
GCCCAGGACA ACGAGGTCCT CCGTGTGCAC TGTGGCCAAG ACGGCGCGAC CGATCTCGAG
CGGGTCATCG CCGAACCGGC GCGCCCCCTC ACGAGCATCG TGGTCGTGAG CTGGGATGTC
CCTTGGCTCG TCGACACCTT CATCGCCGCG GTACGCCAGA TCGTGGACAA CGCGAGCACG
TTCCATCCCA TCTTGGAAGA AGGCGAGCTC ACCGACGCGA ACGCCGAGTT CGTCGAGGGC
TCCCACCTCG TCTCCTTCTT CGCAGCGACG ACACCGACCC GCCTGTCACG CATCGAGACC
GAGCACCTCG CGCGAACCCT CGCGACGCAG GCGACGCAGC TGCTGCGACT CGAGCACGAT
CGCGAGGCCA TGGGCGACGA GCTCGCAACG CTTGCGGAGG CGACCGAGGG CCTCGACGGT
GGCGAGACGC CCGGAACCTC GGCGATCGCC CACTTCCTCC CGATCGCCGA ACTGCGAGTC
AGCGCCGAGG GTGAACAGCG GCGGGGCATC GACGTCGCCG TGCCAACCCT GGCGGTCTCG
GCAGGGCAGT GGCGCCTCGA GCCCACCGCG ATCCCAGCCC CCATCCTCGA TCACTCGCCG
CTGCGCACAC TGTCCATCGG GACGTCGTCG GGCGCCGTGC ACTTCGTGGG GACCTTCCGC
CCGTCGCTCG TCAGCGGGAT CGGGGTTGGC GCACCCGAGA TCGCCAGCCG CCTCGAGCGC
GTCCGCCAGC TCCTCGCGCT CCTGCCATCG AGCCACTCAT GGCGCGTGTT GCGCGACTTC
GTCGGCTCGC TCCCTGCCGA CCTGGCGATC GGAGTCGACG ACGCAACCTT CGACGAGCTG
TGTCGCGCTG GATTGCTCGC CGAGGAACTC GGGCTGCCCC GTGCCCTCGT GATCCCGGTC
GAGGCGGGGG CGAGGCTCGT GGTCGTGGTG CCGGCCGCTC GGGTCGACTA TGGCGTCGAG
GATCGCCTCG AGGCGGTGCT CGTCGAGCGT GGCCTCGTTG CCACCGCACA GCTCACGCAG
AACCTCTCCG AGCGGCGACT CGTCCTCGAC TACCTCCTCG ATCGCGTCCC GGAGGATCCG
AGTCAGCTCG AGGCGGCGAT CGCCGCCGCC ACGACCCCCT TCCGTCTGCG CCTCGAGGCT
GCCGTCAATG CCCTCAGCAC CCCCGATGCC GATCCAGAGA CCTCGAGCCT CGCCACGGCG
CTCGCCGAGG GCATGGAGGA GAGCTACGCC ATCGACACCA CCGAGCGCGA GGCGGCGCTC
GACGTCCTCG CGCTCGGCCG AGCGCGACGC TCGCCAGTAC GGCTCGCGGT ACGTCGACCC
GCGACCGGAG AGGTGGAGCG ACTTCGGCTC GTCGCGGTCG GCCAACGACC AGCGCTGTCC
GACATCGTCC CGGTCCTCGA GGGCTTCGGC GCACGCGTAC GCGAGGAAGT CCCCTACACG
GGACGGGTCG CCGGCGAGGA TGTGTGGATC ATCGAGCTTC GCCTGGGCTG GCCAGCGGGG
GTCGCCGATG GGCTCGGCGA CGACGCAGCG GCCCATCGCC TCGAACGCGC CATCGAAGCG
GTCATCGCAG GTCAGGCAGA GGCGGACGAC CTGAACACCC TCGTGACGAC GGCCGCGCTC
GACCTCGATG ACATCGACCT CACACGCGCG CTGTGTGCCT ACTTGCGCTT TGGGACGCTC
GGTGTCACCG AGGCTTCGGC CCGACGCACG CTCACCCGCA CCCCGCTCGC AGCTCGCGAT
CTCGTCCGGC TCGTCCACGC GCGGTTCGAC CCCGACGCCA GCGAACTCGA TCGACCCCGT
GACGTCGAGG CCATCACGAC CCAGCTCGCC ACCGATATCG AGGCCGCAGC GACGCTCGAG
GACGAGAAGG TGCTGCGCGC GCTCGCCGAG ATCGTCATGG CGATGACGCG GACCAATATC
TTCCAGCCCG AACGCGAGGC CATCGCGTTC AAGCTCGACC CGCGCCAGCT CACCTACCTG
CCCTCGCCGC GCCCACGCTT CGAGATCTAC CTGCGCTCGC GCACCACGGA GGCGGTGCAC
CTGCGCGGCG GACGCATCGC TCGAGGTGGC ATCCGCTTCT CCGACCGGCC CGACGACTTC
CGCACCGAGA TCCTCGGACT CATGAAGGCC CAGACCGTGA AGAACGCGGT GATCGTGCCG
ATGGGCTCCA AGGGCGGCTT CGTCGTTCGC GACCTCGCAC CCGGTGAGCG CAACCCGCAC
AAGGTCGAGC GCTCGTATCG CACCTTCATG CGCACCCTGC TCTCGCTCAC GGACAACCTC
GTCGACGGAA CCATCGTCCA TCCCCCTCGC ACGGTCGTCA CCGACGGCAA CGACCACTAC
CTCGTGGTCG CCGCCGACAA GGGCACGGCG ACCTTCTCCG ATATCGCGAA CGAGATCGCA
CTCGAGATGG GTTTCTGGCT CGGTGATGCG TTCGCCTCGG GTGGGTCGAA CGGCTTCGAC
CACAAGGAGA TGGGCATCAC CGCCAAGGGT GCGTGGATCT CGGTACGACA CCACCTCGAC
GAACTCGAGC GCGACCCCGA CGGCCCCATC ACCGTGATCG GCATCGGCGA CATGTCCGGC
GACGTCTTCG GCAACGGCAT GCTGCGCTCG CACGGGATCC GCCTTGTGGG CGCCTTCGAC
CACCGGCACA TCTTCCTCGA CCCCGACCCC GACCCGGAAC GTTCGTTTGC CGCACGCGCG
AGCCTCTTCG CACGCGGGGC CGGCACGAGC TGGGCCGACT ATCCCGCCGA TGCCATCTCG
GCGGGCGGGG GCGTCTTCTC GCGATCAGCC AAGCACGTCG ACCTCTCGCC AGAGGCTGCC
GTGCTCCTGG ACCTTGCCCC CGGAGCTCAC GAACCCGACG AGGTCATCCA CGCCATGCTG
ATGGCGCCGG TCGATCTCCT GTTCAACGGC GGGATCGGCA CCTACGTTCG TGCGACGACC
GAGCGCGACG CCGACGTCGG CGACCGCGCC AATGATCGCA TCCGCGTCAC GGGATCCGAG
CTACGAGCAC GCATCGTCGC CGAGGGCGGC AACCTTGGCC TCACGCAGGC AGGGCGTATC
GAGTACTGCA TGCACGGTGG CCGTGCCAAC ACCGACTCGA TCGACAACTC TGCCGGTGTT
GACACCTCCG ACCACGAGGT CAACATCAAG ATCGCCCTCG AAGAGCTGCG GCGCCAGGGT
CACCTGACCA CCGAAGAGCG CAACCAGCTC CTCGCACAGC TGACCGGAGA GGTCGAAGCG
CAGGTCCTGG CCGACAACGT CTACCAGAAC TGGGTCCTCA GCCTCGAGGA GCACGAGGCC
GGACGAAGGG CCGAGGAGCA TGGCGCGCTG CTCGAGCGCC TGGTCCGCGA GGCCGAGCTC
GACGTGGCGG TCGAGACGCT GCCCGATCCA GCGGCCGTTC GCGGAGGCTC GCTGGGGCGC
CCGCTCACCA GATCGGAGCT CGCGATCGAG ATCTCCTACG CGAAGATCCA CCTCACGCAG
CTCCTCGAGT CCTCCTCATT GCTCGATCAT CCGATCACCG ACGAGCTCTT CCTCAACTAC
TTCCCGATCG AGGTACGCCG CCTCGTCTCG GACGCAGGCG TGGCGCACCC GCTCCGCCGC
GAGTTGGTCG CGACGGCGCT CGCCAACCTC CTCGTGAACC ACCTCGGCAT CCTCGGTGTG
GCCCGCATCG CCCAGCTTGG CAGAACGAGC TATCTGCGCG CAGCCGAGTT TGCCACGATC
GCCATCTTCG CGACGGGGGC CGAGGACGTC GCTCGCCGCC TTCTCTGGCG CCGCGACGGG
AGCTTCGCGG GTCGGCTTGG TGCCTATGGA CGGATCCGCG ACACCCTCGT CGACGCGGCG
CTCGACCTCC GTCTGCTCGT GGAGGATCCG CTCGAGCTTG CCGACCCAAC CACGCTTGCC
GAGCGCGCGG CTCTCGTCAA CGAGCTGACG GCCGACGAGC GGCTTCGCAC AGAGGCGGCT
GCGCTCGAGG CCGAGGGACA CGACGCCCAC GTAGCAGGCC TCGCAGCCTG GCGCGGCGCG
ACCCTCGCGC TGGCCGCCAT CATCGCTGGC CGCGTGGGTG CGGACGACGC AGCAAGGCTG
CTGGATCAGA CCTGGGCACG AAGCCTGCGC GAGCGCGCAC GCGCGTTGGT CCCGGCGAAT
CTCGTCGAAG CGGCGGCACT GCAGGAGATC ACCGATCGGA TCGCTCGCCT CGCCCTGGCC
GAGATCATCG ACGGGGCCCC GCGTCCTTCC GACGACGCTC TGGGCGAGCT CGAACGAGCG
CTCGGCGCCC GCGACGTGCT GCTCGCGCTG CTGGTCGCGA CGACGATCGC GCCCTAG
|
|---|
| Protein sequence | MLEAGTGRPE TASLLSSVRR HSGAVPSHAG ALEHFVASLA RHLDDEETSA LTTERIGVAV
AALFDALTNA KGSDRCIVEI AQDNEVLRVH CGQDGATDLE RVIAEPARPL TSIVVVSWDV
PWLVDTFIAA VRQIVDNAST FHPILEEGEL TDANAEFVEG SHLVSFFAAT TPTRLSRIET
EHLARTLATQ ATQLLRLEHD REAMGDELAT LAEATEGLDG GETPGTSAIA HFLPIAELRV
SAEGEQRRGI DVAVPTLAVS AGQWRLEPTA IPAPILDHSP LRTLSIGTSS GAVHFVGTFR
PSLVSGIGVG APEIASRLER VRQLLALLPS SHSWRVLRDF VGSLPADLAI GVDDATFDEL
CRAGLLAEEL GLPRALVIPV EAGARLVVVV PAARVDYGVE DRLEAVLVER GLVATAQLTQ
NLSERRLVLD YLLDRVPEDP SQLEAAIAAA TTPFRLRLEA AVNALSTPDA DPETSSLATA
LAEGMEESYA IDTTEREAAL DVLALGRARR SPVRLAVRRP ATGEVERLRL VAVGQRPALS
DIVPVLEGFG ARVREEVPYT GRVAGEDVWI IELRLGWPAG VADGLGDDAA AHRLERAIEA
VIAGQAEADD LNTLVTTAAL DLDDIDLTRA LCAYLRFGTL GVTEASARRT LTRTPLAARD
LVRLVHARFD PDASELDRPR DVEAITTQLA TDIEAAATLE DEKVLRALAE IVMAMTRTNI
FQPEREAIAF KLDPRQLTYL PSPRPRFEIY LRSRTTEAVH LRGGRIARGG IRFSDRPDDF
RTEILGLMKA QTVKNAVIVP MGSKGGFVVR DLAPGERNPH KVERSYRTFM RTLLSLTDNL
VDGTIVHPPR TVVTDGNDHY LVVAADKGTA TFSDIANEIA LEMGFWLGDA FASGGSNGFD
HKEMGITAKG AWISVRHHLD ELERDPDGPI TVIGIGDMSG DVFGNGMLRS HGIRLVGAFD
HRHIFLDPDP DPERSFAARA SLFARGAGTS WADYPADAIS AGGGVFSRSA KHVDLSPEAA
VLLDLAPGAH EPDEVIHAML MAPVDLLFNG GIGTYVRATT ERDADVGDRA NDRIRVTGSE
LRARIVAEGG NLGLTQAGRI EYCMHGGRAN TDSIDNSAGV DTSDHEVNIK IALEELRRQG
HLTTEERNQL LAQLTGEVEA QVLADNVYQN WVLSLEEHEA GRRAEEHGAL LERLVREAEL
DVAVETLPDP AAVRGGSLGR PLTRSELAIE ISYAKIHLTQ LLESSSLLDH PITDELFLNY
FPIEVRRLVS DAGVAHPLRR ELVATALANL LVNHLGILGV ARIAQLGRTS YLRAAEFATI
AIFATGAEDV ARRLLWRRDG SFAGRLGAYG RIRDTLVDAA LDLRLLVEDP LELADPTTLA
ERAALVNELT ADERLRTEAA ALEAEGHDAH VAGLAAWRGA TLALAAIIAG RVGADDAARL
LDQTWARSLR ERARALVPAN LVEAAALQEI TDRIARLALA EIIDGAPRPS DDALGELERA
LGARDVLLAL LVATTIAP
|
|---|
| |