| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Acid345_0689 |
|---|
| Symbol | |
|---|
| ID | 4071334 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Koribacter versatilis Ellin345 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008009 |
|---|
| Strand | + |
|---|
| Start bp | 847883 |
|---|
| End bp | 849058 |
|---|
| Gene Length | 1176 bp |
|---|
| Protein Length | 391 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637982695 |
|---|
| Product | twitching motility protein |
|---|
| Protein accession | YP_589768 |
|---|
| Protein GI | 94967720 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
|---|
| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGCCT CTGAACCAGC GCTTTCGTCC GCACCTTCGC CATCGCCTAC GCCGGTGTTT
ACCACCGATG AGATGCTCAG AACCATGCTG AAAGTCTCTG AAAAGGTCAG CGACCTGATC
TTCTCGCCCG GGCGTGCTCC GCAGGTGGAA CTGAACAGCG CTCTCGTCGC GGTGCCAGGA
TTGCCGACAT TAATGCCCGT GGACACACGG CGAATCGCCG GCGATTTGAT GGGTAATAAC
GAACAAGCGA CAACTTCGTT GAGGGAGAAG GGTTCGGCCG ATCTCTCCTA TAGCCTTGCG
CGTGAATCGC GATTCCGTGT GAACATCTTT TCGCAGCGCG GCAGTTACGC CATCGTGATG
CGCGTCATCC CGCACAGCGT GCCCACATTC GAGCAGTTGA ACCTGCCGCC ACAACTGGCC
GACATTACCA AGCTGATCAA CGGCATCGTC CTGGTCACGG GCCCCACCGG ATCAGGTAAG
AGTTCCACCC TGGCGGCGAT CATCAACAAG GTCAACTTGG AGAAGGCGTG GCACATCGTC
ACCATTGAGG ATCCGATCGA GTTTCTTCAC CCTCATAAGC AGTGCACCAT TCACCAACGA
GAGTTGCATA GCGACACGCC GAGCTTTGCC CTCGCTCTGC GCGCTGCGCT GCGCCAGGCG
CCAAAGGTCA TCCTGGTCGG CGAAATGCGC GATCGTGAAA CCATGGAGAT TGCACTCGAA
GCCGCGGAAA CCGGCCACCT CGTCATGTCA ACTCTCCACA CCACCGACGC CTCCAAAACC
GTGGAGCGCA TCATCGGCAC CTTCCCGATT TCCGACCAGC ACATTATTCG AATCCGCTTA
GCGAAGAGTT TCCGCTACAT CATTTCGCAG CGTCTTATGC CGAAGAAGGA TAAGACCGGA
CGCGTGGCTG CCATCGAGAT TCTCAAGTCC ACCATCCGCA CTCGCGAGTA CGTAGAGAAA
GGCGAGAACG AAGGCAAGAC CTTGCTCGAC GCCATGCGCG ATGGCGACCT CGACGGCATG
CAGTGTTTCG ACGACGTGAT CGAGCGCATG ATCCGCGAAG GTGTGGTCGA CATTGATACT
GGCCTCGGAT ACTCCACCAA CCCCGGCAAC CTGCGCCTCC AGTTGGCGGA CCTGATTGAT
GCTCAGCGCG CCGCGGAATC TGAATTCGAA CCATAA
|
|---|
| Protein sequence | MSASEPALSS APSPSPTPVF TTDEMLRTML KVSEKVSDLI FSPGRAPQVE LNSALVAVPG
LPTLMPVDTR RIAGDLMGNN EQATTSLREK GSADLSYSLA RESRFRVNIF SQRGSYAIVM
RVIPHSVPTF EQLNLPPQLA DITKLINGIV LVTGPTGSGK SSTLAAIINK VNLEKAWHIV
TIEDPIEFLH PHKQCTIHQR ELHSDTPSFA LALRAALRQA PKVILVGEMR DRETMEIALE
AAETGHLVMS TLHTTDASKT VERIIGTFPI SDQHIIRIRL AKSFRYIISQ RLMPKKDKTG
RVAAIEILKS TIRTREYVEK GENEGKTLLD AMRDGDLDGM QCFDDVIERM IREGVVDIDT
GLGYSTNPGN LRLQLADLID AQRAAESEFE P
|
|---|
| |