| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aboo_1317 |
|---|
| Symbol | |
|---|
| ID | 8828279 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Aciduliprofundum boonei T469 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_013926 |
|---|
| Strand | - |
|---|
| Start bp | 1260104 |
|---|
| End bp | 1261768 |
|---|
| Gene Length | 1665 bp |
|---|
| Protein Length | 554 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | |
|---|
| Product | Type II secretion system F domain protein |
|---|
| Protein accession | YP_003483687 |
|---|
| Protein GI | 289596991 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 0.89339 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGGGA TCATGGAGAA ATTTGCAAGG TTATACGCCT CTTTCGACAT TCCTTGGCGC
AAATATATAA TGATGTACGC TATGCCCATA CTTTTAACAA CGATATTTGT AACTATATAC
CTCTCAATAG CCATATCATT TTTCACACAA TTTCCTTTCA TAATCATACT CTATATGATT
CCAGCTTTTG GCGTAATGCT CGTTATGTTT TTCCCATTGC TGAAGGGAGA GAAGAGAAAG
AAGGAAATTG AAAGGTATAT GCATCTATTC ATCACAAGAA TGGCCGTTCT GGCATCTACA
AGATTACCCA GAAAGGAGAT TTTCAGAATT CTCTCGGAAG TTAGGGAGTA TGGGGCCCTA
AGCGATGAAG TTGCAAAAAT ATACAATCTT ATGGAGTACT GGAATTTGAG CTTGCCCGAT
GCTACAAGGA TAGTTGCTAA GAAATGTCCA AGTGTAGAGC TTGCAGATTT CTTAGATCGC
TTGGCCCATA GTGCAGATGC AGGTGAGGAT TTTGAAGTGT TCTTGGAGAA GGAGAGAACG
GTGGTTATGG AGACATATGC CATAAAATAT GAAGCTGCCC TATCTCAAAT GGATGTCTAT
AAAGAAACTT TCGTATCTAT GCTCATCTCT ATGCTATTCT TTGCAGTATT CGTTGCTATC
CTGCCCATGT TCACCACAGG TGATATGACG ATATTCCTCT TCCTCACCCT CTTAGGATTC
TTGACTGTGG AGAGTATAAT GCTCTATGCT ATTAAAGTGA GATTACCTGA GGATGAGGTT
TGGCACAATA GAAAAGATGT GCGCTCTCCA CATGAGATGA AACTTCTTAG GGTGCTTCCC
TTCACATACC TTGCCGTTAT AATTCTATTT TTAATCACAT ATTTTTTAGG ATTACCATTG
GCCCTTGTGA TTGCGATATC AATCGTGCCT TTATTCTATC CTGGCTATTT AATTCATACT
GCAGAGAGTG ATTTGATTAA TTGCGATACT AACTATGATG CATTTATCCG TGCGGTTGGA
AGCTACATTG AAGCGAAGGG CAGTGATGTT ACAGCCATGG AGAGATTGAG AAAGCATGAT
TTTGGAAAGC TAACGAAGTA CATCGACACT TTATATAAGA GACTGCTGAC AAGAATAGAC
AAGAAAATGG CCTGGCGCTA TTTTGCAGGA GAGACGGGGA GCAATTTAAT TTCAAAATTC
ACAGATATGT TTGTCACGGG CTTGGATATG GGTGGAAATC CAAGAAGGAT TTCCAAGATA
ATAAGTGAAT CTTATGTTAG GATGATAGGC TTGAGAAAGA AGAGATTCCA ATCGGCAGCC
AATTTAACAG GTATACTCTA TGGCCTTATG GTAGGCATGG CTTTTACTCT TTATACAACC
CTTAACCTGA TGAAGATGAT GGCCTCGATG ATAAAATACT ATCCTGTGAA TCTGGAGAAA
TACATACATA TTCCACTTTT ATCCGCTCAT TTTCCAATTC AAACCGCAAA TGTAGTATTT
CTTCTTCTCT TAGTTATCCA TGCTCTCGTT TCTTCAATGA TAATAAAGAT CGTAAGCGGT
TCGCATAAGC ATAGCATATA CCTGCATTTC TCCATGCTTG TCTGGATAGG CATAATGGTA
TCCTACTTTA CAAACTGGGC TGTAGGGAGG GTTCTAACCT TTTAA
|
|---|
| Protein sequence | MAGIMEKFAR LYASFDIPWR KYIMMYAMPI LLTTIFVTIY LSIAISFFTQ FPFIIILYMI
PAFGVMLVMF FPLLKGEKRK KEIERYMHLF ITRMAVLAST RLPRKEIFRI LSEVREYGAL
SDEVAKIYNL MEYWNLSLPD ATRIVAKKCP SVELADFLDR LAHSADAGED FEVFLEKERT
VVMETYAIKY EAALSQMDVY KETFVSMLIS MLFFAVFVAI LPMFTTGDMT IFLFLTLLGF
LTVESIMLYA IKVRLPEDEV WHNRKDVRSP HEMKLLRVLP FTYLAVIILF LITYFLGLPL
ALVIAISIVP LFYPGYLIHT AESDLINCDT NYDAFIRAVG SYIEAKGSDV TAMERLRKHD
FGKLTKYIDT LYKRLLTRID KKMAWRYFAG ETGSNLISKF TDMFVTGLDM GGNPRRISKI
ISESYVRMIG LRKKRFQSAA NLTGILYGLM VGMAFTLYTT LNLMKMMASM IKYYPVNLEK
YIHIPLLSAH FPIQTANVVF LLLLVIHALV SSMIIKIVSG SHKHSIYLHF SMLVWIGIMV
SYFTNWAVGR VLTF
|
|---|
| |