21 homologs were found in PanDaTox collection
for query gene Aave_R0034 on replicon NC_008752
Organism: Acidovorax citrulli AAC00-1



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_008752  Aave_R0034  SRP RNA; RNA component of signal recognition particle  100 
 
 		 101 bp  200  5e-50  Acidovorax citrulli AAC00-1  Bacteria  normal  0.052993  normal  0.0100088 
 
 
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NC_011992  Dtpsy_R0029  SRP RNA; RNA component of signal recognitionparti cle  97 
 
 		 101 bp  174  2.9999999999999996e-42  Acidovorax ebreus TPSY  Bacteria  normal  1  n/a   
 
 
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NC_008782  Ajs_R0030  SRP RNA  97 
 
 		 101 bp  174  2.9999999999999996e-42  Acidovorax sp. JS42  Bacteria  normal  0.794672  normal  0.947694 
 
 
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NC_007908  Rfer_R0009  SRP RNA; RNA component of signal recognition particle  94.85 
 
 		 102 bp  153  1e-35  Rhodoferax ferrireducens T118  Bacteria  normal  1  n/a   
 
 
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NC_010002  Daci_R0075  SRP RNA; RNA component of signal recognition particle  94.06 
 
 		 101 bp  153  1e-35  Delftia acidovorans SPH-1  Bacteria  normal  0.643834  normal  1 
 
 
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NC_012791  Vapar_R0019  SRP RNA; RNA component of signal recognitionparti cle  91.75 
 
 		 102 bp  129  1.0000000000000001e-28  Variovorax paradoxus S110  Bacteria  normal  1  n/a   
 
 
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NC_007948  Bpro_R0028  SRP RNA; RNA component of signal recognition particle  91.58 
 
 		 102 bp  125  2e-27  Polaromonas sp. JS666  Bacteria  normal  1  normal  1 
 
 
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NC_008781  Pnap_R0025  SRP RNA  91.58 
 
 		 102 bp  125  2e-27  Polaromonas naphthalenivorans CJ2  Bacteria  decreased coverage  0.00341222  normal  0.445968 
 
 
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NC_008786  Veis_R0002  SRP RNA  93.9 
 
 		 101 bp  123  9e-27  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.467787  normal  1 
 
 
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NC_010524  Lcho_R0047  SRP RNA; RNA component of signal recognition particle  92.42 
 
 		 104 bp  91.7  3e-17  Leptothrix cholodnii SP-6  Bacteria  n/a    normal  0.20206 
 
 
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NC_012856  Rpic12D_R0020  SRP RNA; RNA component of signal recognitionparti cle  86.21 
 
 		 104 bp  52  0.00003  Ralstonia pickettii 12D  Bacteria  normal  1  normal  0.330049 
 
 
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NC_007347  Reut_AR0024  SRP RNA; RNA component of signal recognition particle  86.21 
 
 		 105 bp  52  0.00003  Ralstonia eutropha JMP134  Bacteria  normal  0.255506  n/a   
 
 
-
 
NC_010622  Bphy_R0002    86.21 
 
 		 103 bp  52  0.00003  Burkholderia phymatum STM815  Bacteria  normal  0.180442  normal  0.539085 
 
 
-
 
NC_009080  BMA10247_3560  signal recognition particle RNA  86.21 
 
 		 102 bp  52  0.00003  Burkholderia mallei NCTC 10247  Bacteria  normal  1  n/a   
 
 
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NC_007973  Rmet_R0026  SRP RNA; RNA component of signal recognition particle  86.21 
 
 		 104 bp  52  0.00003  Cupriavidus metallidurans CH34  Bacteria  normal  0.283025  normal  0.297778 
 
 
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NC_010508  Bcenmc03_R0048    84.48 
 
 		 103 bp  44.1  0.006  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.0344887  normal  0.132073 
 
 
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NC_008542  Bcen2424_R0046  SRP RNA  84.48 
 
 		 103 bp  44.1  0.006  Burkholderia cenocepacia HI2424  Bacteria  hitchhiker  0.00820406  n/a   
 
 
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NC_010551  BamMC406_R0048    84.48 
 
 		 103 bp  44.1  0.006  Burkholderia ambifaria MC40-6  Bacteria  normal  0.0963367  normal  0.0663879 
 
 
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NC_008390  Bamb_R0048  SRP RNA; RNA component of signal recognition particle  84.48 
 
 		 105 bp  44.1  0.006  Burkholderia ambifaria AMMD  Bacteria  normal  0.267779  n/a   
 
 
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NC_008062  Bcen_R0102  SRP RNA; RNA component of signal recognition particle  84.48 
 
 		 103 bp  44.1  0.006  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.0105096  n/a   
 
 
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NC_007510  Bcep18194_AR0056  SRP RNA; RNA component of signal recognition particle  84.48 
 
 		 103 bp  44.1  0.006  Burkholderia sp. 383  Bacteria  normal  0.0102004  normal  0.775524 
 
 
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