| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | AFE_2776 |
|---|
| Symbol | |
|---|
| ID | 7134781 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidithiobacillus ferrooxidans ATCC 23270 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011761 |
|---|
| Strand | - |
|---|
| Start bp | 2467945 |
|---|
| End bp | 2469552 |
|---|
| Gene Length | 1608 bp |
|---|
| Protein Length | 535 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 643531130 |
|---|
| Product | benzoylformate decarboxylase |
|---|
| Protein accession | YP_002427147 |
|---|
| Protein GI | 218666320 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCATGTAA GCGTTAAAAC GGCAACTTTC AAACTGTTAC GTCAGCTTGG GATGACCTGG
ATTGTGGGTA ATCCTGGTTC CACCGAAGAA ACCTTTCTGC AAGATCTACC AGAAGATTTT
ACTTATATAC AAGCCTTGCA CGAGGGCAGC GTCGTCGCCA TCGCCGACGG GCTTGCCCAA
GGCTTGCGTC AAGCGGTATT AGTCAATGTG CATACGGGCG TTGGCCTGGG CAACGCCATG
GGCGCAATCC TCACGGCATA TCAGAATAAA ACGCCGTTGA TTATTACCAG CGGTCAGCAA
ACGCGGGATA TGTTGTTGTT TGAACCTCTT CTGACTAATG TGAATGCGGT AACCATGCCC
CTTCCCTGGG TAAAATGGAG TTACGAGCCC GTCCGTCCTG AGGATGTGCC GGGCGCATTC
ATGCGTGCCT ACGCCATGGC CGTTCAGCCT CCAGCGGGCC CTGTCCATTT GTCTTTGCCC
ATGGATGACT GGGATAAAAT GATTACTGAC CGTAATTACT TGAGGACGGT ATCGCATCGG
GTGGCACCAG ATCCAGTGCG TCTGGCCGAC TTTGCCCGAC GCATTGACCA GAGTACAAAT
CCCGTACTGA TATATGGTGC CGATATTGCT CGCTCTGATG CCTGGGATGC GGGTGTGCAC
TTGGCGGAAC AGTTGCAGGC TCCGGTCTGG TCCACGCCTT TTAACGAAAG AGCGATATTC
CCTTGCAGTA ATAGCTTGTA TGCGGGGATT TTGCCCGCAG CCATTGCACC TTTGGCGGAC
TGCCTGCGGG GCCATGACCT GGCCATTGTG GTTGGTGCAC CGGTATTCCG TTATTACCCT
TATGTCGCAG GCCACTATCT GCCAGAAGGC ACATCGCTCC TGCAGATAAC GGATGATTCT
GACGCGGCTG CCAAAGCACC TGTCGGGGAT AGCCTGATAA GCGATAGCTT GCTATTTTTA
GAACAAATAG TGCCTATGAT TGCTCCTCGC AGTCACCACG CGAGGCCTCC TCACCATGAT
CCGCGGGTAA AATGGTCTGC ATCTACAGCA TTTCTTTCTT CTGAAGCGGT CTTTGATATC
CTGAAACCGC TCTGTCCTGA TGAATTTATC CTGCTTGAAG AGTCTCCTTC CAACGCGCCA
GCGCTTCGGC AGATTTTCGC CATTGATCAA CCGGATAGCT TTTATACCTT TGCTTCTGGG
CAATTGGGCT GGAACATGCC CGCAGCTATA GGTCTAGCAC TGCACGAACA GATCAGTGGA
CGGCATCGAC CAGTGATTGT TTTTGTCGGT GATGGGGCTT TTAACTATGC GCCGCAGTGC
ATTTACACCG GGGTACGTCA CCATACACAT GTTATATTCG TGGTATTGCA AAATCACGAA
TATGCCATTC TTAAAGAGTT TGCTATTGAA GAGAAGTTGA AAAACATCCC GGGCCTGGAA
CTGCCGGGAA TCGCCATTGC GGATATTGGA TCGGCCTATG GCGCGCACGC CACTGTCGCT
ATCACTGCGA TACAATTAGA GGCTGCCTTC AGGGAGGCGA TGGGCTACCA GGGTGTCAGT
GTGCTGCAGG TACCGATCAG TTCTGATTTG CATCCGCTGA TTGATTAG
|
|---|
| Protein sequence | MHVSVKTATF KLLRQLGMTW IVGNPGSTEE TFLQDLPEDF TYIQALHEGS VVAIADGLAQ
GLRQAVLVNV HTGVGLGNAM GAILTAYQNK TPLIITSGQQ TRDMLLFEPL LTNVNAVTMP
LPWVKWSYEP VRPEDVPGAF MRAYAMAVQP PAGPVHLSLP MDDWDKMITD RNYLRTVSHR
VAPDPVRLAD FARRIDQSTN PVLIYGADIA RSDAWDAGVH LAEQLQAPVW STPFNERAIF
PCSNSLYAGI LPAAIAPLAD CLRGHDLAIV VGAPVFRYYP YVAGHYLPEG TSLLQITDDS
DAAAKAPVGD SLISDSLLFL EQIVPMIAPR SHHARPPHHD PRVKWSASTA FLSSEAVFDI
LKPLCPDEFI LLEESPSNAP ALRQIFAIDQ PDSFYTFASG QLGWNMPAAI GLALHEQISG
RHRPVIVFVG DGAFNYAPQC IYTGVRHHTH VIFVVLQNHE YAILKEFAIE EKLKNIPGLE
LPGIAIADIG SAYGAHATVA ITAIQLEAAF REAMGYQGVS VLQVPISSDL HPLID
|
|---|
| |