| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_3483 |
|---|
| Symbol | |
|---|
| ID | 9140201 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Planctomyces limnophilus DSM 3776 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014148 |
|---|
| Strand | - |
|---|
| Start bp | 4502040 |
|---|
| End bp | 4503836 |
|---|
| Gene Length | 1797 bp |
|---|
| Protein Length | 598 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | |
|---|
| Product | efflux transporter, RND family, MFP subunit |
|---|
| Protein accession | YP_003631495 |
|---|
| Protein GI | 296123717 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.807091 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCAAAG CCGCCCCTGA TGAAGCCGAA GACGGAGTGA TGACCACTCC CGTTCGCAAA
GGCGATATGC AGGTGACAGT GACGGAAACG GGGACACTCG ACAGTGCCCG CAATGCCATC
CTCACTTGCC AGGTCGAAGG CTCGACAACA ATCATCAGCA TTGTCCCCGA AGGCACCTTC
GTAAAGGAAG GGGATATCGT CTGCGAACTG GATGCTTCGG CTCTGGTGGA TCGCGAAACC
ACACAAAAGA TCAGTCTCAC GCAGGCCGAA GCGCTGCTTT CACAAGCCCA GGAAAATGTC
GAGATTCAGA AGACTCAGAA CGAGAGCGAT GTGGCGGCTG CCGAACTGAA GCTCTCGCTG
GCACTTCTCG ATCTGCGCAA GTTTGAAGAA GGCGAGTTTT TACAACAGGT CAATGAGCTT
TCCGGAGCAG TGACTCTGGC GCGAGAAAAC CTTTCGCGTG CGGAAGAGTC GCAAGCATTC
GTGAAGCGAA TGGCCCAGAA AGGCTACCGC AGTCAGAACG ATCTCGAAGC CGAACGGATT
GCCGTGACAA AAGCCGAGAT CGATTTGAAG GTGGCCGAAG AAAAGCTCAA GGTGCTTAAA
GATTTCACCT ATGTGCGCAC GCTCGAAGAA TTGCAGGCCA ATGCCAAAGA GTTTGAGCGG
GAAATTCAAC GCGTGAAGCG AAAGTCTGTG GCCGCACTTT CTCAGAAGCA GGCCGAACTT
TCGAAGTGCG AACTGACATT CAAGGTCGAG AAGGACAAGT ACGAACGTAT CGTGAAGCAG
ATTGAAGCCT GCACGATCCG TGCGCCGCAG GATGGGCAGG TCGTCTGGGC CAATGCCCGT
GATCCCCGGC GTTCGGATGC TCCCGTGATC GAAGAAGGGG CTGTGGTTCG TGAACGACAG
GCGATTATCA ACCTGCCTGA TTACGATGCG ATGAAGGTCA ATGCCCGGAT TCACGAAAGC
CGTATCAGCC TCATCAAGAC AGGTCTGCCC GTACGGGTAC GCATCGATGC CTATGCTGGC
GAAGTCTTTG CCGGTGTGGT CGATACTGTT TCTTCAGTTC CACTGTCGAA CAGTTCGTTC
TCTCGTGGCG ACGTGAAAGA ATACGAAGCC AGCGTGCGAC TGACCGATGC CGTCGAAAAG
GTGAACAAGC TGAGGCCCGG CCTCTCCGCC AACATCGAGA TCATTGTGGC TGAACTGAGC
GATGTGCTTC TGGCTCCCGT CCAGGCCATC GTGACGATTG GTCGCGATCA ATACGCCTGG
GTACGAAGTG GCGATAAGTA CGAGCGGCGA ACGGTGAGAA TTGGTCGCAC CAACGAACGT
CAGATCGAGA TTAAAGAAGG TCTGGCCGAT GGCGAGAAAG TGGTCATGAA TCCTCGAACC
CTCTTCGCCA AAGAAGTGGG TCAGCTCGAG AATGAACTCG CGAAAAAGGA AGCGGAACAA
TCGGCCGAAG GTGGCCCACG CCGTCCAGGT GGCCCGCGAG GTATGGGTGG TGAACGTCGC
GGCCCCGGTG GGCCAGACGG TGCCGATGGT TCCAGCCCAA TAATCCCGGG TCGACCTGGC
ATTCCCGGTG AGCGTGGCAG TCGTGAACCT GGTGCAGGTG AATCTGGCCG ACCACAAGGC
GGGCGTCCGG ATGCTTCCCA GCTCGACGCC GGTCGGGTCC GTCCCCAGAA TGAAGGTAGT
GCGGGAACAC GTGGCCCTGC CGATTTTCCT GTCGAGACAA AACCTGCGGA AGCCGGCGCG
ACGTCATCAG AAAATCGCCA GGCACCCGCT CTGCCTTTGC CCGCCGCCAC GAAGTAA
|
|---|
| Protein sequence | MIKAAPDEAE DGVMTTPVRK GDMQVTVTET GTLDSARNAI LTCQVEGSTT IISIVPEGTF
VKEGDIVCEL DASALVDRET TQKISLTQAE ALLSQAQENV EIQKTQNESD VAAAELKLSL
ALLDLRKFEE GEFLQQVNEL SGAVTLAREN LSRAEESQAF VKRMAQKGYR SQNDLEAERI
AVTKAEIDLK VAEEKLKVLK DFTYVRTLEE LQANAKEFER EIQRVKRKSV AALSQKQAEL
SKCELTFKVE KDKYERIVKQ IEACTIRAPQ DGQVVWANAR DPRRSDAPVI EEGAVVRERQ
AIINLPDYDA MKVNARIHES RISLIKTGLP VRVRIDAYAG EVFAGVVDTV SSVPLSNSSF
SRGDVKEYEA SVRLTDAVEK VNKLRPGLSA NIEIIVAELS DVLLAPVQAI VTIGRDQYAW
VRSGDKYERR TVRIGRTNER QIEIKEGLAD GEKVVMNPRT LFAKEVGQLE NELAKKEAEQ
SAEGGPRRPG GPRGMGGERR GPGGPDGADG SSPIIPGRPG IPGERGSREP GAGESGRPQG
GRPDASQLDA GRVRPQNEGS AGTRGPADFP VETKPAEAGA TSSENRQAPA LPLPAATK
|
|---|
| |