Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Snas_3690 |
Symbol | |
ID | 8884889 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Stackebrandtia nassauensis DSM 44728 |
Kingdom | Bacteria |
Replicon accession | NC_013947 |
Strand | + |
Start bp | 3924827 |
End bp | 3926659 |
Gene Length | 1833 bp |
Protein Length | 610 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | |
Product | inner-membrane translocator |
Protein accession | YP_003512440 |
Protein GI | 291301162 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00194124 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.651023 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGCACGTCT ATCTGATTCC GACCCTCAAC GGATTCGCGT ACGGGCTGCT GCTGTTCACC ATCGCCGCGG GCCTGACCCT GTCGCTGGGG GTCGCCAACG TCTTGAACCT GGCCCATGGG ACGACGTTCC TGGCCGGGGG TTATGTCGGT GTGGTGCTGT CGGACGGCAG CTGGTCGGGG CTGCTGCTGG GCGTGCTCGC CGGTGCGGCC GTGGGTATGG CCGCCGGTGG GGTGCTGTCG GTGGCGGCAC GGCCTCTGTA CGGGCGGGGA CATCTGTCCC AGGCCATGCT CACCTTCGGT CTCGCCCTGC TCGGCGGCTA CGCGCTCATC GAGATCTTCG GTGCCCAGGA GATGCGTGCC GTCATACCCG CGGCACTCGA CGGCACTGTG GAGGTTTGGG GCAAGACCTA TCCGGTGTAC CGCCTGGGTT TCATCGGCGT GGCCGCTTTG CTGGCGGTGG TGGGCTGGTG GGTCCTGTCG CGCACCTCGA TCGGCGCGCG GGTGCGGGCC ACCGTCGACG ACGCGGGCAT GGTGTCGAGC CTGGGGATCA ACCCGCGCTT GGTCATGGCC GGGGTCCTGG TGGTCGCGGG GCTTCTGGCG GGTGTCGGTG GCGTCCTGGG TGGACCGATT CTCGGACTGG GAACCGGCAC CGCGCATCAG GTGCTGTTGC TGTCGTTGGT CATCGTGGTG CTCGGCCAGG CGGGATCGCT GCGCGGGGCG TTGCTGGCGT CGCTGTTCGT CGGTCTGGTC CAGAACCTCG GTATCGCGCT GTTTCCCGCC GCGGCTTCGT ATCTGTTGTT CGCGGCGATG GCGGTGGTGC TGATCGTGCG TCGCGGCAAG GCGCTTGGAG TCAACGAGCA CCATCCGGAT CGGCCCGTCA CCGTCGTGGC GTCGCGGCCA TACCTGGTGT GGGTGGGCTT CGCGGTGGTG GTGCCGCTGC TGTACCTGGT GCCGCTGCTT TTCGACGACT TCGCGTTGTC CCAGCTGAAC CGGGTGGCGG CGTTGGGGTT GCTCGCGGTC AGCATCGCGC TGCTGGCGGG CTACTGTGGA CTGGCGACGC TGGGGCAGAC CGCGCCGTTC GCCGTCGGCG CCTACGTGAC GTTTCAGCTC GCCGAGGCCG GGATCGCCGT CGGGCCGGTG CAGTGGGCGA TCGTCGTCGT CGCGTGCGCG GTCTTCAGCT TGGCGACCGG GCCGCTGGTG CTGCGTACCC GCGGCATGGT CTTCCTCATG GTGACCTTGG CCGTGGGCAT GGTGACCGCC CAGGTCGCGG AGCAGTGGAC CTCGGTCACC GGCGGCACCG ACGGTTCCGG GCTCATCAGT GCTTCGCTGC CGTGGTGGGG CGCCGAACCG CTCGTCGACG ACGGCGACAT CTACTGGTAT GCCCTGTCCG TCGGTGTGGT GGTGCTGATC GCGACGGTGG CGGTGACGCG CGGCGCGGCC GGAACGAGGC TGCATGGCGT GCGGGACAAC GAGCTTCGGA TGCGTTCGCT CGGACATCGG GTGCCCGGGT ATCTGCTCGC GGCCTATGTG GGCGCTGGCG TCATCGCCGG GGTCGGCGGG TCGCTGTTCG CCACCGGTCA GCGGTTCGTG TTTCCCGCCG ACGTCGGTTT CGAGGTCGCC GCCATCGCGT TGCTGGCGGC GTTGATCGGA GGCATCCATT CCGCGGCCGG TGCGGTGGTC GGCGTCGTCG TGGTCATCGC GGTGCGGTAC TGGCTGGCGC CCGAAGGACA CGGTGAACTG TGGCTCGGGG TGCTGTTCGT CGCGGCCGTT TACCTACTGC CGCACGGCAT CACCGGACGG GTCGCGCAAC TGCGTCGGGC CTGGTCCGGG TGA
|
Protein sequence | MHVYLIPTLN GFAYGLLLFT IAAGLTLSLG VANVLNLAHG TTFLAGGYVG VVLSDGSWSG LLLGVLAGAA VGMAAGGVLS VAARPLYGRG HLSQAMLTFG LALLGGYALI EIFGAQEMRA VIPAALDGTV EVWGKTYPVY RLGFIGVAAL LAVVGWWVLS RTSIGARVRA TVDDAGMVSS LGINPRLVMA GVLVVAGLLA GVGGVLGGPI LGLGTGTAHQ VLLLSLVIVV LGQAGSLRGA LLASLFVGLV QNLGIALFPA AASYLLFAAM AVVLIVRRGK ALGVNEHHPD RPVTVVASRP YLVWVGFAVV VPLLYLVPLL FDDFALSQLN RVAALGLLAV SIALLAGYCG LATLGQTAPF AVGAYVTFQL AEAGIAVGPV QWAIVVVACA VFSLATGPLV LRTRGMVFLM VTLAVGMVTA QVAEQWTSVT GGTDGSGLIS ASLPWWGAEP LVDDGDIYWY ALSVGVVVLI ATVAVTRGAA GTRLHGVRDN ELRMRSLGHR VPGYLLAAYV GAGVIAGVGG SLFATGQRFV FPADVGFEVA AIALLAALIG GIHSAAGAVV GVVVVIAVRY WLAPEGHGEL WLGVLFVAAV YLLPHGITGR VAQLRRAWSG
|
| |