Gene Aboo_0542 details

Gene Information

• Locus tag: Aboo_0542
• ID: 8827487
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Aciduliprofundum boonei T469
• Kingdom: Archaea
• Replicon accession: NC_013926
• Strand: +
• Start bp: 525385
• End bp: 526032
• Gene Length: 648 bp
• Protein Length: 215 aa
• Translation table: 11
• GC content: 48%
• Product: TrkA-N domain protein
• Protein accession: YP_003482915
• Protein GI: 289596219

Plasmid Coverage information

• Num covering plasmid clones: 34
• Plasmid unclonability p-value: 0.840001
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTATATTA TTGTCATTGG CGGTGGAAGA ATAGGTGAGT ACTTGGTCAG TATGCTTGTT 
GAGGAGGGTC ACAATATAGC GCTAATAGAG AAGGATGATG AGAGGGCCAG GCATATGGCC 
GAGAATTATG ATATTTTGGT TATAAAGGGA GATGGCAGCG AGGCCTCTTA CCTTGAGGAT 
GCTGGAATAA CCAAGGCGGA TGTGCTTGTT GCCTGCACTG GCAATGATCA GGTGAATTTT 
GTGGCCTGCC AGCTTGCAAA GCACACTTAC AATGTGGGAA AGGTCATAGC AAGAACCACG 
AATCCCGGAA ATAAGGTTCT GTACGAGAGT TTGGGTGTGG ATGTGGTTAT AAGCACAACG 
GAAGTGGCTG CCAAGGCCAT GTACGCTGGA ATAAAGGGCT TTGCCTCGGT GCTAACTTTT 
GCGGGAGATG TGGAGCTCTT GCATGTGCGT GTTGATAAGC TCTCTCCCAT AATTGATAGA 
AAGATAAGCG ATATACACAT GCCTTGGGGA AGCATAATAG CCACGATTTT GCGCAAGGGC 
CAGATAATCG TGCCCAGAGG AGACGAAGTC ATAAGGGAGG GAGACGAGCT TGCGATAGTC 
ACCAAGAAAG GTGTGGAAAA GAAGGTGAGG GAAATAGTGT TGGGGTAG 

 

Protein sequence

MYIIVIGGGR IGEYLVSMLV EEGHNIALIE KDDERARHMA ENYDILVIKG DGSEASYLED 
AGITKADVLV ACTGNDQVNF VACQLAKHTY NVGKVIARTT NPGNKVLYES LGVDVVISTT 
EVAAKAMYAG IKGFASVLTF AGDVELLHVR VDKLSPIIDR KISDIHMPWG SIIATILRKG 
QIIVPRGDEV IREGDELAIV TKKGVEKKVR EIVLG