| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_1582 |
|---|
| Symbol | |
|---|
| ID | 8725316 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | + |
|---|
| Start bp | 1910102 |
|---|
| End bp | 1912663 |
|---|
| Gene Length | 2562 bp |
|---|
| Protein Length | 853 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | |
|---|
| Product | TonB-dependent receptor plug |
|---|
| Protein accession | YP_003386430 |
|---|
| Protein GI | 284036500 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00843923 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.229135 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGGCG GTGCGCAACC GCCAGCTGCC ATACCGGGTA CAGCAACAGA TAATACGCCC
CGTGGCAACG CCAAACTAAC GGGTGTCGTA ACGGATTCCA CAACAGGAAA GCCCGTCGAG
TTTGCCAGCA TCGCGCTGAT CAATGCGCAA ACAAAAAAGC CAATTGACGG AACTGTGGCT
GATGAGAAGG GTAAATTTAC CCTGAACAAA CTACCACAGG GCGATTTTCA GCTTTTGATT
TCGTTCGTTG GGTACCGCAA CAAAACTATC TCCAGCGTTA AGCTCGACCG CAAAGGTGAT
ATTAACCTGG GGGCCATCAA ACTGGGTGCC GATGTCCGGA CATTGAAAGA GGTAGAAGTG
ATTGGTCAGG CTTCGCTGGT CGAAGAAAAA GTTGACCGTC TGGTTTATAA TGCCGATAAA
GACCTTACGG CCAAAGGGGG AGACGCTACG GATGTCATGC GGAAAGTGCC CCTGCTCTCC
GTCGATCTGG ACGGTAACGT AAGCCTTCGG GGAAGTAGCA ACGTACGGGT GTTGATCAAT
AACAAACCCT CCACCATTGT TGCCAGCAGC GTGGCCGATG CCCTGAAGCA GATTCCGGCC
GACATGATTA AAACAGTAGA GGTCATCACC AGCCCGTCGG CTAAGTACGA TGCGGAAGGA
TCGGCGGGTA TCATCAACAT CATCACCAAG AAAACAACCT TACAGGGCTT TACGCTGAAT
ATCGATTCGG GCGTGGGTAA CCGGGGCAGC AACCTGGGCC TGAACGGAAA TTTACGGACG
GGTAAAATGG GATTTAGCCT GAGCGGTTTT GGCCGGGCGA ATTACAATGT TGTCGGTAAG
TTTGCCAATA CGCAGCAAAC GTTCGGAAGC AAAGGAACAA CCACGACCGA CCAGACGGCC
AACACCCGCA ACCACGGTCT ATTTGGTCAG TATACCCTTG GCTGGGATTA CGATATTAGC
AAGACCAGTT CCATCACAGC CAGCCTGCGG TACGGTGCCC GGAACAACTA CCAGAATCAG
GATAACTTCC TGACGCGTAC GATCTCGCCA GGCTCCCTTT TCCCCATTGT GTCGGATCGA
AATGTATTAA CCAAAGATTT GTCCGGTACA GTCGATGCCA ACGTTGATTA TACGCGCACA
TTTAAGCCAC AGCAGGAGTT GAGCGTATCG GCGCAGTTCA GCCGCAACAA CCGTAATAAT
GACTTTACGT CCGATATTAT GAGTGCGCCG AATTTTTCGG ACGTTCTGTC CCGTCAGCAA
AATCTTAACA ACAGCTACAA CCAGGAGTCG ACTATTCAGG GTGATTATCA AACACCCATC
GGGAAAAACC AACTGCTTGA ATTTGGGGGT AAGGGTATTT TCCGGCAGGT TGAGAGTGCC
TTCAGCTACA ATTATGCCGT TGGTTCGGGA GGTTTCACGA CAGACCCGTC CCGTGCCGCC
AATACGCTGA ATTATGACCA GAGTATTGGA GCAGGTTATG TTTCCTATAC GCTGACGACG
AAAAAGAAAT ATACCTTCAA GGCTGGCACA CGCTACGAAC ACACCACCAT CAATGCCAAC
TACAGCCAGA ATCAGCCGGG CGAACAGGGT GGAGCGGCCG GTAAAGACCT GGGAATCCCG
AGCTACAGCA ATTTTGTGCC GAGTATCAAC ATATCGAAAT CGCTGAAAGG TGGCAAAACG
GTTAAACTGG CGTACAATCG CCGGTTGCAG AGGCCGGGTA TTCAGTTTCT GAACCCGAAC
GTAAATACTT CCAATCCAAC CAGCATCACG AGAGGCAACC CGTTGCTGTC GCCCGAATTG
ACAGACAATC TGGAGTTGAG CACCAGTGCC TACATTAAAA GCGTTTACCT GAACGTATCG
TTGTTTGCCC GCCAGACCAA CAACTCCATC ACGAGCGTTC GGGATACTAT CAGAGCGGAT
GCCAGTTTGG GCACTACGTC AACGCTGGCG CAGGCTATTC AAACAAGCTA CCTGAACATT
GGCCGGGAGT CCGCTTACGG AACGAACGTA TTCGGTAATG CAACGCTCTT CTCAAAATGG
CAGATTGGGG GTGGGTTTGA TATGTATTAT GCCTACCTGA CCAACAACAA TGCCGGGTCG
GTCTACAATG CTACAAACTC AGGCTGGGTG ACCACGGGTC GCTTTTTCAC AAACCTGACC
TTGAAAAATG GCTGGGGGGT GCAGGGCTTC GGGTTCATTC GCGGCAGACA GGTACAGTTG
CAGGGGTATC AGGGCGGCTT TGCTTTCTAT AGCATTGGAT TCAAAAAAGA CCTGAAAGAC
AAACGGGGTA GCTTTGGTGT TGCAGCCGAG AACTTCCTCA ACCATCCGTT CACGGTTAAC
TCCGAATCAT CATCTCCCAT TTTCGCCCAG TCCAGCACAA CAAGTTTGTA CAATGCGGGT
GTTCGGGTCA ACTTCAGCTA CAAACTGGGG AAACTCAGCT TCGATTCGCC ACAGCGTCAG
AAAAAATCGA TCAATAACGA CGACGTAAAA GGTGGTGAAG GTGGAGGTGG CGAACAACAG
CCTCAAGCCG CACCCGCCGG TGGTGCCCGT AGGCCACGGT AA
|
|---|
| Protein sequence | MPGGAQPPAA IPGTATDNTP RGNAKLTGVV TDSTTGKPVE FASIALINAQ TKKPIDGTVA
DEKGKFTLNK LPQGDFQLLI SFVGYRNKTI SSVKLDRKGD INLGAIKLGA DVRTLKEVEV
IGQASLVEEK VDRLVYNADK DLTAKGGDAT DVMRKVPLLS VDLDGNVSLR GSSNVRVLIN
NKPSTIVASS VADALKQIPA DMIKTVEVIT SPSAKYDAEG SAGIINIITK KTTLQGFTLN
IDSGVGNRGS NLGLNGNLRT GKMGFSLSGF GRANYNVVGK FANTQQTFGS KGTTTTDQTA
NTRNHGLFGQ YTLGWDYDIS KTSSITASLR YGARNNYQNQ DNFLTRTISP GSLFPIVSDR
NVLTKDLSGT VDANVDYTRT FKPQQELSVS AQFSRNNRNN DFTSDIMSAP NFSDVLSRQQ
NLNNSYNQES TIQGDYQTPI GKNQLLEFGG KGIFRQVESA FSYNYAVGSG GFTTDPSRAA
NTLNYDQSIG AGYVSYTLTT KKKYTFKAGT RYEHTTINAN YSQNQPGEQG GAAGKDLGIP
SYSNFVPSIN ISKSLKGGKT VKLAYNRRLQ RPGIQFLNPN VNTSNPTSIT RGNPLLSPEL
TDNLELSTSA YIKSVYLNVS LFARQTNNSI TSVRDTIRAD ASLGTTSTLA QAIQTSYLNI
GRESAYGTNV FGNATLFSKW QIGGGFDMYY AYLTNNNAGS VYNATNSGWV TTGRFFTNLT
LKNGWGVQGF GFIRGRQVQL QGYQGGFAFY SIGFKKDLKD KRGSFGVAAE NFLNHPFTVN
SESSSPIFAQ SSTTSLYNAG VRVNFSYKLG KLSFDSPQRQ KKSINNDDVK GGEGGGGEQQ
PQAAPAGGAR RPR
|
|---|
| |