| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1220 |
|---|
| Symbol | |
|---|
| ID | 8710074 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gardnerella vaginalis 409-05 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013721 |
|---|
| Strand | - |
|---|
| Start bp | 1449000 |
|---|
| End bp | 1450238 |
|---|
| Gene Length | 1239 bp |
|---|
| Protein Length | 412 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 646483308 |
|---|
| Product | putative aspartate transaminase |
|---|
| Protein accession | YP_003374413 |
|---|
| Protein GI | 283783659 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0436] Aspartate/tyrosine/aromatic aminotransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.0000000208657 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGAGA ATATTGCAGA AACTTCATCC TCAGAAAATT GGCGCGTATT AAGCGAGCGT
ATTAACCGAG TCGCTCCGAG CGCAACTTTG GCAGTAGACG GCAAGGCAAA AGCTATGAAA
GCTGACGGAA TTGACGTCGT AAGCTTTGGT GCAGGAGAGC CAGATTTTCC TACTCCTTCT
TACATTGTTG ATGCTGCAAC ACAAGCGTGT AAAGATCCGC GCAACTATCG TTATACTGCT
ACTGCAGGTT TATCTGAGCT TAGAGAAGCA ATTGCTCGTA AAGTGCAGCG AGATTCCGGA
TACGAAGTTT CCTCAAATCA AGTCGTAGTT ACAAACGGCG GAAAGCAAGC TGTGTACGAA
GCTTGCCAAA TTCTTTTAAA TGATGGCGAC GAAGTTATTA TTCCAGCTCC GTATTGGACG
AGTTATCCGG AAGCAGTAAA GCTTGCAGGC GGCGTGCCTG TGCCGGTTTT GGCAGGTGCA
GATTGCGGTT TTGAGCCAGA TGTTGAGACA ATTGAGTCCG CTCGCACTTC ACGCACGCGC
GCAATTATCG TAACTTCGCC TTCGAATCCT ACAGGTGCTA TTTGGAGCGC GCAAACTATT
CGCGCAATCG GCGAGTGGGC TGTAAAACAC CATATTTGGG TTATTTCTGA TGAGATTTAC
GAGCACTTGC ATTACGACGG CATTTCGACT TCGTATATTG GCGTCGAGGT GCCGGAAATT
CGCGAGCAGC TGCTGATTTT GAATGGTGTT GCTAAAACTT ACGCAATGCC TGGCTGGCGT
GTTGGCTGGA TGGTGGCGCC GGAAGATGTT GCTAAAGCTG CAATTAAGCT TCAAAGCCAT
ATGACTTCTA ATGTTTCTAA TATTTCACAG CGCGCAGCAA TTGCTGCAGT CGGCGGTTCG
CTGGATGTGG TCGCCACTAT GCGTGAGGCT TTTGATGCTA GACGCAAAGC AATTGTGGAA
GCGTTGAACA ATATTGACGG CGTTACTTGC CCTCTTCCTC ACGGCGCTTT TTATGCGTTT
GCTAACATTG AGGCGTTGCT TGAGCGTCCG CTTGGCGAGA AGCGCGAACT GCCGCATACT
TCTTCTCGAT TTGCTGAAAT GTTGCTTGAC GAAGCGCATG TTGCTGCGGT TCCGGGAGAA
GCTTTTGGTG CTCCTGGCTA TTTGCGATTC TCTTGCGCTC TTGCTGACGA CCAGCTTGCT
GAGGGCATGC GTCGCATGAA GAAGTGGGTT GAAGCTTAA
|
|---|
| Protein sequence | MAENIAETSS SENWRVLSER INRVAPSATL AVDGKAKAMK ADGIDVVSFG AGEPDFPTPS
YIVDAATQAC KDPRNYRYTA TAGLSELREA IARKVQRDSG YEVSSNQVVV TNGGKQAVYE
ACQILLNDGD EVIIPAPYWT SYPEAVKLAG GVPVPVLAGA DCGFEPDVET IESARTSRTR
AIIVTSPSNP TGAIWSAQTI RAIGEWAVKH HIWVISDEIY EHLHYDGIST SYIGVEVPEI
REQLLILNGV AKTYAMPGWR VGWMVAPEDV AKAAIKLQSH MTSNVSNISQ RAAIAAVGGS
LDVVATMREA FDARRKAIVE ALNNIDGVTC PLPHGAFYAF ANIEALLERP LGEKRELPHT
SSRFAEMLLD EAHVAAVPGE AFGAPGYLRF SCALADDQLA EGMRRMKKWV EA
|
|---|
| |