Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_1149 |
Symbol | pepN |
ID | 8709361 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | - |
Start bp | 1327435 |
End bp | 1330050 |
Gene Length | 2616 bp |
Protein Length | 871 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 646483240 |
Product | membrane alanyl aminopeptidase |
Protein accession | YP_003374348 |
Protein GI | 283783594 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0308] Aminopeptidase N |
TIGRFAM ID | [TIGR02412] aminopeptidase N, Streptomyces lividans type |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCAGGAG CAAATCTGAC TCGCGTAGAA GCTCAAGAGC GTTTCGACGC TATCCAAATG CCAATTCATT ACGATGTTGC GCTTGATTTA GGAAAGGGCG GCCGCGATTT TAAGTCGCGC ACAAAGATTG AGTTCGATGC TAAAGCTGGT AGCGCAAGCT TCCTCGATTT AATTGCAAAC AGCGTAGAAT CCGTGGTGTT AAACGGTGCC GATCTTGACG TTTCTAAAGT TTTTGCAGAC AGCCGAATTG AGCTTGCAAA TTTGCTGGAG CATAATACCG TAGAAGTTGT AGCAAATTGC CAATATTCCA ACACGGGCGA AGGCTTGCAC AGAAGCGTCG ATCCTTCCGA CGGAAACGTT TATCTTTACA CGCAGTTCGA AGTTCCGGAT GCTCGCCGCG TTTATGCTGT GTTTGATCAG CCAGATTTAA AGGCTGTTTT TGACTTTAGC GTGGACGCTC CAGAAAGCTG GATTGTTACT TCCAACATGC CAGCCGCCAG CGAAACCGTG CTTGAAGGCC GCAAGACGGA AGACGGCACT TTGGAAAATG GCACTGTAGA AGGCATGAAG CGCTGGGTAT TTGAGCCAAC GCCAAAAATG AGCTCCTACT TAACTGCTAT TTGCGCAGGT TCTTACGCCG AATGGCACAC AACTTACAAC AATGAAGACG GTCGCGTAGT GCCAATGACA ATGTACTGCC GTCAGGCACT TAAAGACGCT TTTGCAAAAG ACGTTGACTA CTTGTTCGAT ATTACGAAGA AGGGCTTTGC CTTCTACGCT AAGACTTGGG GAGTGCCATA TCCGTACGCA AAGTACGATC AGATTTACGT TCCAGAATAC AACGCTGGAG CTATGGAAAA CATTGGTATG GTTACCATTC GAGACCAGTA CGTGTTTGAA TCCAAAGTTA CGGACGCTTA TGCTGAGCGC CGCGTTGTAA CAGTTTTGCA CGAGCTTGCG CACATGTGGT TCGGCGACTA CGTAACTATG AAGTGGTGGA ACGACTTGTG GCTTAACGAA TCCTTCGCAG AATTCACTTC TACTCTTGCC ACCGCTGAAG CAACTGAATG GCACGACGCT TGGAGCACTT TCAATTCCGG CGAAAAAAGC TGGGCGCTTA ATCAAGATCA GCTTCCAACA ACGCACCCAA TCGTGGCTCC AATCAACGAT TTGAACGACA CTTCCGTCAA CTTCGACGGC ATCACTTATG CGAAGGGCGC CTCCGTTTTG AAGCAGCTCG TAGCTTACGT TGGTCGCGAA AAGTTCTTTG AAGGAATCCA CAACTACTTG AGCAAGCATG CTTACAGCAA CGCTACTTTG GCTGATTTGC TTCAAGAACT TGAGCTTACA AGCGGCCGCG ATTTGAAGGC GTGGAGTGCT CAGTGGCTTG AAAAAGCTGG AATTAACACG ATTTCTACCG AAGTAGAAGA AGCAGGTGAC GGCACTATTG CTTCCTTGCG TTTGCGTCAG AGCGCACCAG TTGAGCATCC TGTTCTGCGC GCGCATCGCT TGGCTGTCGG ATTCTACAAT GTAGACGAAG CAACTGGCGA AATTAAGCGC ACAAAGCGAA TCGAACTTGA CGTTGACGGC GAAGTGACGG AAGTTGTTGA AGCGTGCGGC GAAAAAATGC CAGCACTTAT CCTTGTAAAC GACGACGACT TGACTTACAC AAAGCTACGT TTTGACGAAA AGTCGCTTGA GTTTGCTGCA GAAAACTTGT ATCGTTTCAA GGATTCTTTG ACTCGCTCGC TTATTTGGCT CACGTTGTGG GATATGACTC GCGACGCAGA ATTCCCAGCA GAACGCTTTG TGGAACTGAG CCTTAAGGCC TTGGCAACCG AGCGTGAATC AACTACTTTC CGCTATGCTC TTGGTCAAGT GAAAGTAACT GCAAGCCACT ACGTGGTTCC AGAGCGTCAA GCAGAAGTCG CAAAGCATGT TGCTCACGAA TTGTGGCAGT TGGCTTTGGC AGCTTCTGCA GGTTCCGACG AGCAATTCCA ACTTGTTAAG GCTTATCTTG GCTACGGTGA AGTTGGAGAT GCTGAGTTTG TGCGTGTAGC TAACGGTTTG CTCGACGGTT CTGTGAATCT GGAAGGCTTG GGAATCGACA ACGACTTACG CTGGAGCATT CTTATTGCGC TCGCAGGTGT GAACGCTTTG GACGAAGCTG GAATTGACGC GGAACTTCAA AAGCGCGACA CGACTGAGAA TCGCGAATAC GCTTACCAGG CTCGTGCAGC TCGCTCAACT GCAGAAGCTA AGGATTGGGC TTTTGAACAG GCTTTGCGTA ATCTCGATTT GACGAATATG CAAATGGGCG CTGTGGTTGC TGGCTTTGCA AGCACTGCTA AAGGCGATTT GGTTAAGCCT TACGTTGATC GCTACTTTGC TGAAGTTGAG TGGATTTGGA AGAACCGCAC CTTCCACATG GCTGAAGCTT TGATCGAAGG CTTGTATCCT GTGTATGCGC CGGTTGAGGA GCTGGTTAAG CACGGTGAAA AGTGGCTTGA GGCTCATGCT GATGCAGATC AGGCTTTGCG TCGCATGGTG CTCGGCAGCC TTGATTCTTC TCGCCGCACG CTTAAGGTAC AGCATTACAA CGCTTCCTTG TGCTAG
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Protein sequence | MPGANLTRVE AQERFDAIQM PIHYDVALDL GKGGRDFKSR TKIEFDAKAG SASFLDLIAN SVESVVLNGA DLDVSKVFAD SRIELANLLE HNTVEVVANC QYSNTGEGLH RSVDPSDGNV YLYTQFEVPD ARRVYAVFDQ PDLKAVFDFS VDAPESWIVT SNMPAASETV LEGRKTEDGT LENGTVEGMK RWVFEPTPKM SSYLTAICAG SYAEWHTTYN NEDGRVVPMT MYCRQALKDA FAKDVDYLFD ITKKGFAFYA KTWGVPYPYA KYDQIYVPEY NAGAMENIGM VTIRDQYVFE SKVTDAYAER RVVTVLHELA HMWFGDYVTM KWWNDLWLNE SFAEFTSTLA TAEATEWHDA WSTFNSGEKS WALNQDQLPT THPIVAPIND LNDTSVNFDG ITYAKGASVL KQLVAYVGRE KFFEGIHNYL SKHAYSNATL ADLLQELELT SGRDLKAWSA QWLEKAGINT ISTEVEEAGD GTIASLRLRQ SAPVEHPVLR AHRLAVGFYN VDEATGEIKR TKRIELDVDG EVTEVVEACG EKMPALILVN DDDLTYTKLR FDEKSLEFAA ENLYRFKDSL TRSLIWLTLW DMTRDAEFPA ERFVELSLKA LATERESTTF RYALGQVKVT ASHYVVPERQ AEVAKHVAHE LWQLALAASA GSDEQFQLVK AYLGYGEVGD AEFVRVANGL LDGSVNLEGL GIDNDLRWSI LIALAGVNAL DEAGIDAELQ KRDTTENREY AYQARAARST AEAKDWAFEQ ALRNLDLTNM QMGAVVAGFA STAKGDLVKP YVDRYFAEVE WIWKNRTFHM AEALIEGLYP VYAPVEELVK HGEKWLEAHA DADQALRRMV LGSLDSSRRT LKVQHYNASL C
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