Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0949 |
Symbol | |
ID | 8709586 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | - |
Start bp | 1091901 |
End bp | 1093712 |
Gene Length | 1812 bp |
Protein Length | 603 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 646483046 |
Product | AMP-binding enzyme |
Protein accession | YP_003374162 |
Protein GI | 283783408 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1022] Long-chain acyl-CoA synthetases (AMP-forming) |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCAAGAAT ATTCTCGTCC ACTTGATGAG TCTATTGATA CAGATGTTAA TGTTTTCTCA CTGCTAGAAG AGCGAGCAGA GCGCAATCCT AATGGTTCTT TGGTTGAATA CGTTGGAGCT GACGGCGTTT GGAAGTCATA TACTGCTGAA GAATTTAGAG ATAAAGTAAT AGCTGTTGCT AAAGGCTTTA TTGCTAGAGG AGTAATGCCT GGTGACGCTG TGTCAATTAT TGCTCACACT TCATGGCAAT GGACAGTTCT TGATATGGCT ATTATGTCTA TAGGCGCATT GACAGTGCCA ATTTATGAAA CAAGCTCTTC GCTGCAAATA CAACATATTG TTCAAGATTC TCAAGTATGT TCAATATTTG TGGAGTCTCC TGAAATGTTG CCGAAAGTAG AGGCTGTTCA AGAAGAATGT CCTACTCTTC ACGACGTATA TGTGATGAAT CGTGGTGCTA TCGACGCGTG CATTGAATAC GGTAAAGCAG TAACTGATGC TGAATTTTAT GAGCGAGTGC ACGCTGTTAA TGGAAGTGAC ATAGCAACAA TTGTGTACAC TTCAGGTTCA ACTGGTGAGC CAAAAGGAAT TGAACTTACT CATAGCAATT TTGTCTTTAT TGCTAAATCA GGTGTTATTT CTATGCCAGA CATTGCGTTA AAAGGCAGCC CGCGTCTTTT GCTGTTCTTG CCTCTTGCGC ACGTTTTTGC TAGGTTTATG CAATTGTTCT GCTTTGCTGG AAATATAACT CTTGGTTTGA CGAGTAATTT GAAAACTGTA TTGTCTGATT TTCAAACTTT TAAACCAACA TTTATTCTTG GGGTTCCACG CATTTTTGAG AAGATTTACA ATGCTGCTTC TCAAAAAGCA GGCAGAGGAG TAAAAGGTTT TATTTTTGCT TATGCATCTA AGGTTGCTCG CGAATGGTCT CGCGCTCAAC AGTCTAGTTC AATGGTTCCT CCAATGCTCG CTCTTAGCCA TTCAATATGT AAAAAATTAG TGTATGCTCC ACTACTACAC GTATTTGGAG GCTCTGTTTC ATACGCTATT TCGGGCGGTG CTCCTTTAGA TTTGTCGATT GCACACTTCT TTAATGGCAT TGGTTTGCCT CTTCTAGAAG GCTATGGAAT GACAGAAACT TGTGCTCCTT CTATGGTGAA TCCTACGACA GGTTATCGCA TTGGTACCGT TGGTTTGCCT GTAAAGGGTG TATCTGTTGC TATTGCTGAT GATGGTGAAT TGTGTATTAA AAGTCCTGCA GTGTGCAGAG GCTACCATAA TAATCCTGAG CTTACCAAAC AGCAGATTGT AAATGGCTGG TTGCATACTG GAGATTTTGG ATCTTTAGAC GATGACGGTT TTGTGCGTAT TACAGGCAGA AAGAAAGATC TTATTATTAC TGCTGGCGGT AAGAACTTAT CTCCAAATGC GTTAGAAGCT TCATTAATGT CTTCACCTAT TATTTCTCAA GCTGTTGTTA TCGGAGACAG GAAGCCGTTT GTTTCAGCAA TTATTGCGCT CGATTTATCA GAAGTAAATA CTTGGCTTTC TTCGCGTGGT GCATGCCCCG TACGGTCTTT AAAAGAAGCT TCACATAACG GTATTGTGCG AGCAGAAGTT GAACGTGCTG TTAGCAAAGC AAATGAGCTA GTTTCTAGAG CTGAGTCTAT TCGCAAGTTC GAAATAGTTC CAGATGAGTT TACTCAAGCA AACGGTTTGA TTACGCCAAG TTTAAAGGCG CGTCGTCAAG TTGTTGTAGA GCGTTATAAC GACCTTATCG AACACGTTAT TTATGCTCCA CGCAAACGTT AG
|
Protein sequence | MQEYSRPLDE SIDTDVNVFS LLEERAERNP NGSLVEYVGA DGVWKSYTAE EFRDKVIAVA KGFIARGVMP GDAVSIIAHT SWQWTVLDMA IMSIGALTVP IYETSSSLQI QHIVQDSQVC SIFVESPEML PKVEAVQEEC PTLHDVYVMN RGAIDACIEY GKAVTDAEFY ERVHAVNGSD IATIVYTSGS TGEPKGIELT HSNFVFIAKS GVISMPDIAL KGSPRLLLFL PLAHVFARFM QLFCFAGNIT LGLTSNLKTV LSDFQTFKPT FILGVPRIFE KIYNAASQKA GRGVKGFIFA YASKVAREWS RAQQSSSMVP PMLALSHSIC KKLVYAPLLH VFGGSVSYAI SGGAPLDLSI AHFFNGIGLP LLEGYGMTET CAPSMVNPTT GYRIGTVGLP VKGVSVAIAD DGELCIKSPA VCRGYHNNPE LTKQQIVNGW LHTGDFGSLD DDGFVRITGR KKDLIITAGG KNLSPNALEA SLMSSPIISQ AVVIGDRKPF VSAIIALDLS EVNTWLSSRG ACPVRSLKEA SHNGIVRAEV ERAVSKANEL VSRAESIRKF EIVPDEFTQA NGLITPSLKA RRQVVVERYN DLIEHVIYAP RKR
|
| |