| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0656 |
|---|
| Symbol | pth |
|---|
| ID | 8709668 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gardnerella vaginalis 409-05 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013721 |
|---|
| Strand | + |
|---|
| Start bp | 737934 |
|---|
| End bp | 738533 |
|---|
| Gene Length | 600 bp |
|---|
| Protein Length | 199 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 646482762 |
|---|
| Product | aminoacyl-tRNA hydrolase |
|---|
| Protein accession | YP_003373886 |
|---|
| Protein GI | 283783132 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0193] Peptidyl-tRNA hydrolase |
|---|
| TIGRFAM ID | [TIGR00447] peptidyl-tRNA hydrolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCATCGG ATTTTTGGCT TATTGCTGGC TTGGGAAATC CTGGTACAAA ATATGAGGGT
ACTAGACACA ACATGGGTTT TATGGTTGCA GACGTTTTGG CACAACGTTG GTCAGTATCT
CTTTCGGATC ACAAAGGTTT AGCTAAACTT GGCAAAGGTG TTATGAATCT TGATGGTCGC
GTAGCAAAGT TTTTCCTTGC TAAACCGTTG ACTTTTATGA ATGATTCTGG TGCTGCAGTA
TCTTCTATAA GCTCCTATTA TCAAATAGAA CCGGATCATA TTGTGATAAT TCACGATGAT
ATGGATTTAG ATTTTGGACG CATTAAAGTA AAAGCAGGAG GCTCTGCGGG AGGACATAAC
GGTATTCGTT CTATCGATCG CTCTCTTGGC ACTCCTCAAT ATTCTCGAGT GAGAATGGGT
GTTGGTCATG CGCAGCGTGG TGCTCACGCG CACGATAATA CTGTCAATTG GGTTCTTGGA
GGTTTTGCTG CAGCTCAAAA ATCTGATCTT CCAAACTTTT TAGCAGATGG TGCTGATGCT
GCAGAAAGTA TTATTTTCCA TGGATTAGCA GCAACGCAGG AGAAGTTTAA TGGCCGCTGA
|
|---|
| Protein sequence | MASDFWLIAG LGNPGTKYEG TRHNMGFMVA DVLAQRWSVS LSDHKGLAKL GKGVMNLDGR
VAKFFLAKPL TFMNDSGAAV SSISSYYQIE PDHIVIIHDD MDLDFGRIKV KAGGSAGGHN
GIRSIDRSLG TPQYSRVRMG VGHAQRGAHA HDNTVNWVLG GFAAAQKSDL PNFLADGADA
AESIIFHGLA ATQEKFNGR
|
|---|
| |