| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0100 |
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| Symbol | |
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| ID | 8709686 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 118908 |
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| End bp | 119900 |
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| Gene Length | 993 bp |
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| Protein Length | 330 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 646482221 |
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| Product | ABC transporter, ATP-binding protein |
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| Protein accession | YP_003373367 |
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| Protein GI | 283782613 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1131] ABC-type multidrug transport system, ATPase component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.174206 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTAGAAT TTCAACATAT TACAAAGCGT TTTGGTGCAA AGACAGCGCT TAACGATGTT
TCTTTCGTCG CCGAAGACGG TAAAGTCACG GGCTTTTTAG GACCTAATGG CGCTGGTAAA
TCTACAACCA TGCGTTGCGC GTTAAATCTT ATTCATGCAA ATAGTGGCAC TTCTCTTATT
GACGGCAAAC CTTACGCAAA AATTGCATCC CCAATGACGG AAGTTGGCGC AGTTCTTGAT
GCAAAGTCTG CTCACAGAGG TCGAACGGCT TACAATCACC TGTATTCATT GGCTTTAACT
CACGGAATAT CAAAGAAACG TGTCGATGAA GTCATTGATA TTACTGGTTT AACTAGCGTA
AAAAATCGCA AGGCAGGTTC ATTCTCGCTT GGCATGGGTC AGCGTCTTTC CATTGCTGCG
GCTCTTTTAG CAGATCCACA TAATCTCATA CTTGACGAAC CGGTTAATGG TTTGGATCCG
GAAGGTGTTA AGTGGGTTCG CGAATTATGC AAGTATTATG CAAGCCAAGG TCGTGCAATA
CTACTTAGTT CTCACTTAAT GAGCGAAGTC GCGCTTACTG CAGATAATCT TGTGATTATT
GCGCACGGAG AAATTTTGGC GCGCACAACA GTACAAGATT TTGTTAATGC ACATTCTCAG
CATGCTATAC GTTTAGTGAC ACCTGAAGGC GAAAAACTAA AGTCTGTGCT CACTCAGAAT
CATCCGGAAT GTAAGATTTT GTCTGATAAT CGCACACCTC AAGATGTTCA AGAGGGCGAA
CTTTTTAAGG TAACAGGTTG TGAGCTTAAT CAACTTGCTC GCGAAATTGC AGATAATCAA
ATTATGGTTT ACCAGCTAAA TCAAGAGCAT GCATCGCTTG AGGAAGCATA TTTGGCTCTT
ACGCACGGCC AAGAGCAGTA CGTAACAAAA GCATTGCCAA ATGCTACTGC TGCGACTGGA
ACGCAATATG CGGATGGAGG AAATGCAAAA TGA
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| Protein sequence | MLEFQHITKR FGAKTALNDV SFVAEDGKVT GFLGPNGAGK STTMRCALNL IHANSGTSLI
DGKPYAKIAS PMTEVGAVLD AKSAHRGRTA YNHLYSLALT HGISKKRVDE VIDITGLTSV
KNRKAGSFSL GMGQRLSIAA ALLADPHNLI LDEPVNGLDP EGVKWVRELC KYYASQGRAI
LLSSHLMSEV ALTADNLVII AHGEILARTT VQDFVNAHSQ HAIRLVTPEG EKLKSVLTQN
HPECKILSDN RTPQDVQEGE LFKVTGCELN QLAREIADNQ IMVYQLNQEH ASLEEAYLAL
THGQEQYVTK ALPNATAATG TQYADGGNAK
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