Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0015 |
Symbol | |
ID | 8709890 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | - |
Start bp | 16279 |
End bp | 17049 |
Gene Length | 771 bp |
Protein Length | 256 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 646482138 |
Product | hypothetical protein |
Protein accession | YP_003373286 |
Protein GI | 283782532 |
COG category | [S] Function unknown |
COG ID | [COG3689] Predicted membrane protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.000410409 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAAAAGC AAAAATGTGT TGAGCATAAT GCTTGTAAAA AAATCACTTT AGCTCAATTG GTAGAAGCTA TTTTATTGCT ATTTTTTGCA GTCATAATTG CGAAAGTTAC TTTAAGCGGT AGATATACGC TTTTTACTAC GCCTAGAGCA TATTATTATT TGTTAATTAC TGCTATTTTG CTATTTATTT TGTCTATATG TGCTGCGATT GGATGGTTTT CTGTTTCTTC GCGCGATGTT TGGCGTATGT TTGTAGCTTT CGTTGTTCCT GCGCTACTTA TTATTGTTCC TTTGCGTTAC GCTCAAAATA TTAGTGTAGA TGGATTCGAC CAGTATGCTG GCGGTCGTGC TATTGCTATT CGTAGCCAAA ATTATCCTTT GCCAGGATTG TATGAAAAAT CTCATGAGAT AACAGTTGAT GATGATGATT TCGGCTCCTG GTATGACGAA ATCGATCATA ATGCTGCAAA ATATGATGGA TACGCGATTA CTCTTACAGG TTTTGTCAGC AGAGATTCTA CGTTGAATGC AAATCAATTT AGGGTATCTC GTCAGCTTAT GTCATGCTGT ATTCTCGACA TGTCTCCGTT TGGATTAGTT GCCGAAAAAT CAAATATTGG CGAAATTCAA GATCATGAAT GGGTGCGTGT TCGTGCACGC GTTTCTAGAG GCAATATTGG CATTCCTGGA TATCAGCATC CTGGAGTTGT GCTGCACGTT ATATCAATGC AAACAGCTCA AGCTCCAACT GGATATTTTT ATCGCCCATA A
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Protein sequence | MKKQKCVEHN ACKKITLAQL VEAILLLFFA VIIAKVTLSG RYTLFTTPRA YYYLLITAIL LFILSICAAI GWFSVSSRDV WRMFVAFVVP ALLIIVPLRY AQNISVDGFD QYAGGRAIAI RSQNYPLPGL YEKSHEITVD DDDFGSWYDE IDHNAAKYDG YAITLTGFVS RDSTLNANQF RVSRQLMSCC ILDMSPFGLV AEKSNIGEIQ DHEWVRVRAR VSRGNIGIPG YQHPGVVLHV ISMQTAQAPT GYFYRP
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