| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sros_8585 |
|---|
| Symbol | |
|---|
| ID | 8671920 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Streptosporangium roseum DSM 43021 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013595 |
|---|
| Strand | - |
|---|
| Start bp | 9470381 |
|---|
| End bp | 9473995 |
|---|
| Gene Length | 3615 bp |
|---|
| Protein Length | 1204 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | |
|---|
| Product | transcription-repair coupling factor |
|---|
| Protein accession | YP_003343970 |
|---|
| Protein GI | 271969774 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCAAGTAG CCTTGGGTGG TACCCCCGTG CCTCACCGGC CGGGGGCCTG TCGTGTTGCC
GTCGTGGGGC TGTGGGCGAA TCTGATGAGC CTTTCCGGAC TGCTGGACCT TGTCGCAGGG
GAGCCGAAGC TGGCTTCCGT TCTTGAGGAC GTCCGAGGGG GAGACTCCTC CGACGTGTCG
CTGATCGCGC CACCCGCGCT GCGGCCGTTC ACCGTGGCCG CGCTGGCCAG GGAGGGGGCC
AAGGACGGGG CGCGGGCCGT TCTCGCGGTG ACCGCCACCG GGCGCGAGGC CGAGGATCTC
GCCGCGGCGC TCACCAGCCT GCTCGACCCG AACACCGTCG CCGTCTTCCC CGCCTGGGAG
ACGCTGCCGC ACGAGCGCCT GTCGCCGCGC GGCGACACGG TCGGCCAGCG GCTCGCCGTA
CTGCGCAGGC TGGCCCACCC GATTGAGGGC GACGTCGCCG CGGGCCCGCT GCAGGTGATC
GTCGCGCCGG TCCGGGCGGT GCTCCAGCCG ATCGTGCGCG GTCTGGGCGA CCTCCGCCCG
GTACGGCTGC GCGCCGGTGA CGACGCCGAT CTCGACGGCA TCGTGCACCG GCTCGTGGAG
AACGGATACA ACCGGGTCGA CATGGTGGAG AAGCGCGGCG AGGTGGCCGT CAGGGGCGGC
CTGCTGGACG TCTTCCCGCC GACCGAGGAG CACCCGCTCC GGCTGGAGTT CTGGGGCGAC
AGCGTCGAGG AGATCCGCTG GTTCAAGGTC GCCGACCAGC GGTCGCTGGA GGTGGCGGAG
GAGGGGCTGT TCGCGGCCCC CTGCCGTGAG CTGCTGCTGA CGGAGGACGT CAGGCGGCGG
GCGCGGGAGC TCGCCGAGCT GCATCCGGCG CTCGCTGAGA TCCTGGACCA GCTCGCCGAG
GGCGTCCCGA TGGAGGGCAT GGAGGCGTTC GCGCCGGTGC TCGCCGGGGA GATGGACCTG
CTCATCGACC ACCTGCCGGC GCAGGCGGCG GTGTTCGTGT GCGACCCGGA GCGCATCCGC
GGCCGCGCCG ACGAGCTGGT GCGGACCAGC CAGGAGTTCC TGGAGGCGTC CTGGATCAAC
GCGGCGTCCG GCGGGGAGGC GCCGATCGAC CTGGGGGCGG CGGCGTTCCG CACGCTGGAG
GAGATCCGTG ACCACGCGCG GGAGCTCGGC CAGCCCTGGT GGTCGATCGC GCCGTTCGGC
GGCGACGACC TCGGCGACGG GCTGGTCCTG CAGGCGCGCG AGTCGGAGGC CTACCGGGGC
GACACCCAGC GCGCGCTGGG CGACATCAAG GGCTGGCTGG AGGAGGACAA GGTCGTCGTG
CTGCTCAGCG AGGGCCACGG CCCCGCCGAG CGGATGGTCG AGCTGCTCAA GGGCGTGGAT
CTGCCCGCGC GGCTGGAGAG GGCGCTCGAT CGGGCGCCGG ACGGGACGGT CGTCCACGTC
AGCACCGGCC TGATCGAGCA CGGCTTCGTC AGCCCCACCC TGGCCGTGCT GACCCACCTG
GACCTGGTCG GGCAGAAGGC GTCCACCAAG GACATGCGGC GGCTGCCGTC CAAGCGGCGC
AACATGGTCG ACCCGCTCCA GCTCAAGGTC GGCGACCACG TGGTGCACGA GCAGCACGGC
GTGGGCCGCT ACGTCGAGAT GGTGCAGCGG ACCGTGCAGG GCGCGACCCG CGAATACCTG
GTGATCGAGT ACGCCAAGGG CGACCGGCTC TACGTGCCGA CCGACCAGCT CGACGAGGTC
ACCCGCTACG TCGGCGGCGA GTCGCCGACG CTCAACCGGA TGGGCGGCGC CGACTGGGCC
AAGGCCAAGA CCAAGGCGAA GAAGGCGGTC AAGGAGATCG CCGGGGAGCT GATCCGCCTC
TACTCCGCCC GGATGGCCTC GCCGGGACAC GCCTTCGGCC CCGACACGCC GTGGCAGCGG
GAGATGGAGG ACGCCTTCCC CTACGCCGAG ACCGGCGACC AGCTGGAGGC CATCGACGAG
GTCAAGCGCG ACATGGAGCG CGGGATCCCG ATGGACCGGC TGATCTGCGG CGACGTCGGC
TACGGCAAGA CCGAGATCGC GGTGCGGGCG GCGTTCAAGG CCGTGCAGGA CGGCAAGCAG
GTGGCGGTGC TGGTGCCGAC CACGCTGCTG GTCCAGCAGC ACCTGTCCAC CTTCGCCGAG
CGGTTCTCCG GATTCCCGCT GAACGTCCGG CCGATGTCGC GTTTCCAGAG CGACGGCGAG
GTCAAGGCGA CGCTGGAGGG CCTGCGCGAG GGCTCGGTGG ACGTGGTGAT CGGCACGCAC
CGGCTGTTCT CGCCGGAGGT CAGGTTCAAG GAGCTGGGCC TGATCATCAT CGACGAGGAG
CAGCGGTTCG GCGTCGAGCA CAAGGAGGCC ATGAAGCACA TGCGGACGCA GGTCGACGTG
CTGGCCATGT CCGCCACGCC GATCCCGCGC ACGCTGGAGA TGGGCCTGAC CGGCATCCGC
GAGATGTCGA CGATCCTCAC CCCGCCGGAG GAGCGGCACC CGATCCTCAC CTTCGTCGGC
CCCTACGACA ACAAGCAGAT CGGCGCCGCG ATCCGGCGCG AGCTGATGCG CGACGGCCAG
ATCTTCTTCG TCCACAACCG CGTCTCCAGC ATCAACAAGG TCGCGGCCAT GCTGCGCGAG
CTCGTGCCCG AGGCCAGGGT CGCCGTCGCG CACGGCCAGA TGAACGAGCA CCAGCTTGAG
AAGATCATGG TGGGCTTCTG GGAGCGCGAG TTCGACCTGC TCGTCTGCAC CACGATCGTC
GAGTCGGGCC TGGACGTGCC CAACGCCAAC ACGCTGATCG TGGACCGGGC CGACAACTAC
GGCCTGTCCC AGCTCCACCA GCTCCGCGGC CGGGTCGGCC GGGGCCGCGA GCGCGGCTAC
GCCTACTTCC TGTACCCGCC GGAGAAGCCG CTCACCGAGA CCGCCCACGA GCGGCTGGCC
ACCATCTCCC AGCACACGGA GATGGGCGCG GGCATGTACG TGGCGATGAA GGACCTGGAG
ATCCGCGGCG CGGGCAACAT CCTGGGCGCC GAGCAGTCGG GCTTCATCGC GGGCGTCGGC
TTCGACCTCT ACGTGCGGAT GATGGCGGAG GCCGTGCAGG AGCAGAAGGC CAAGCTGTCG
GGCGGCTCCG TGGAGGAGGA GCGGCCGGAC GTCAAGGTCG AGCTGCCGAT CAACGCGCAC
ATCCCGCACG ACTACGTGAC CTCCGAGCGG CTGCGCCTGG AGGCCTACAA GCGGATCGCC
GGGATCGGCG CCGACGTCCA CATCGCCGCG GTCCGCGACG AGCTCGTCGA TCGGTACGGC
AGGCCGCCGC AGGAGGTGGA GAACCTGCTG GAGGTCGCCC GCTTCCGGAT CCGCGCCCGC
GTGGCCGGGC TGACCGACGT CACCCTGCAG GGCCAGCACA TCAGGTTCGC CCCGGTGACG
CTCAGGGACT CCCAGCAGGT CAGGCTCCAG CGCCTGTACC CGAAGGCGCT GCTGAAGCCG
GCAACCGGTA CGTTGCTGGT GCCCGTCCCC AAGACCAGGC CCCTCGGCGG TCAGCCGCTG
CGCGATCTGG ATCTGCTCAA GTGGTGCGGG GATCTGGTCG AGGCGATGTT CCTCCAGAAC
ATGCCGGTAA AATGA
|
|---|
| Protein sequence | MQVALGGTPV PHRPGACRVA VVGLWANLMS LSGLLDLVAG EPKLASVLED VRGGDSSDVS
LIAPPALRPF TVAALAREGA KDGARAVLAV TATGREAEDL AAALTSLLDP NTVAVFPAWE
TLPHERLSPR GDTVGQRLAV LRRLAHPIEG DVAAGPLQVI VAPVRAVLQP IVRGLGDLRP
VRLRAGDDAD LDGIVHRLVE NGYNRVDMVE KRGEVAVRGG LLDVFPPTEE HPLRLEFWGD
SVEEIRWFKV ADQRSLEVAE EGLFAAPCRE LLLTEDVRRR ARELAELHPA LAEILDQLAE
GVPMEGMEAF APVLAGEMDL LIDHLPAQAA VFVCDPERIR GRADELVRTS QEFLEASWIN
AASGGEAPID LGAAAFRTLE EIRDHARELG QPWWSIAPFG GDDLGDGLVL QARESEAYRG
DTQRALGDIK GWLEEDKVVV LLSEGHGPAE RMVELLKGVD LPARLERALD RAPDGTVVHV
STGLIEHGFV SPTLAVLTHL DLVGQKASTK DMRRLPSKRR NMVDPLQLKV GDHVVHEQHG
VGRYVEMVQR TVQGATREYL VIEYAKGDRL YVPTDQLDEV TRYVGGESPT LNRMGGADWA
KAKTKAKKAV KEIAGELIRL YSARMASPGH AFGPDTPWQR EMEDAFPYAE TGDQLEAIDE
VKRDMERGIP MDRLICGDVG YGKTEIAVRA AFKAVQDGKQ VAVLVPTTLL VQQHLSTFAE
RFSGFPLNVR PMSRFQSDGE VKATLEGLRE GSVDVVIGTH RLFSPEVRFK ELGLIIIDEE
QRFGVEHKEA MKHMRTQVDV LAMSATPIPR TLEMGLTGIR EMSTILTPPE ERHPILTFVG
PYDNKQIGAA IRRELMRDGQ IFFVHNRVSS INKVAAMLRE LVPEARVAVA HGQMNEHQLE
KIMVGFWERE FDLLVCTTIV ESGLDVPNAN TLIVDRADNY GLSQLHQLRG RVGRGRERGY
AYFLYPPEKP LTETAHERLA TISQHTEMGA GMYVAMKDLE IRGAGNILGA EQSGFIAGVG
FDLYVRMMAE AVQEQKAKLS GGSVEEERPD VKVELPINAH IPHDYVTSER LRLEAYKRIA
GIGADVHIAA VRDELVDRYG RPPQEVENLL EVARFRIRAR VAGLTDVTLQ GQHIRFAPVT
LRDSQQVRLQ RLYPKALLKP ATGTLLVPVP KTRPLGGQPL RDLDLLKWCG DLVEAMFLQN
MPVK
|
|---|
| |