| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sked_17550 |
|---|
| Symbol | |
|---|
| ID | 8633391 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sanguibacter keddieii DSM 10542 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013521 |
|---|
| Strand | + |
|---|
| Start bp | 1954108 |
|---|
| End bp | 1956252 |
|---|
| Gene Length | 2145 bp |
|---|
| Protein Length | 714 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | |
|---|
| Product | protein-export membrane protein SecD |
|---|
| Protein accession | YP_003314516 |
|---|
| Protein GI | 269795061 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.122587 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGCCACCA CCAACCGCTC CACCTCCCGT CCGGGACGGT CGCTCATCGG GCTCGGGATC
ATCGTCCTGG TCCTCTTCGG CAGCATCGGC ATCGGGACGT GGCAGTCTGA CGCCTCGTGG
TCGCCGAAGC TCGCCCTGGA CCTCGAGGGC GGCACGCAGA TCATCCTGCA GCCCGTGACC
ACGGACGGTC AGACGGTGAC CTCCGAGGAC ATCAACCAGG CGATCGCGAT CATCCGTCAG
CGTGTCGACT CCTCGGGCGT CTCCGAGGCG GAGATCACCA GCCAGGGTGG CAGCAACATC
GTGGTGGCCC TGCCGGGCCA GCCGAGCCAG GAGACGCTCG ACCTGGTCCG GGAGTCTGCG
CAGATGCAGT TCCGGCCTGT CCTCTCCTTC TCGATGGTGG CCCCGACGGC CCTGCCCACG
GAGGACCCGA CGACCGGTCC GACGGCGCCG ACCGACGTGC CCACCGAGGA CGTCGCGCCC
GAGGACGGTG CGACCACCGA CGCTCCTGAG GAGCCCGCGA CCGACGCGAC GACCGAGCCG
GCCGAGTCCG GCTCCGGTGG CGGCGTCGCC GCAGCCACGG ACCCGGCCGT CGAGCCGACG
ACGGACGCGG CGACGGAGCC TGCCGTGGAG CCCACGACCG ACGCGACCGA GCCTGCCGTG
GAGCCCACGA CGGACGCCGA GGTCCCGCTC CCGTCCAACC CGAGCGACCT CGCCCAGATC
ACCCCCGAGC TCCTCGCCGA GTTCCAGGCG CTGACCTGCA GCCCCGACGC GAGCGCCGCG
GGCACCGCGC CCAAGGACCC CGCGTCGCCC ATCGCCGTCT GCTCGGTCGA CGGGACGATG
AAGTACATCC TCGGCCCGAT GGAGATCGCC GGGACCGAGA TCGACAGCGC CAGCTCCGGC
CTCCAGGTCA ACTCGCAGGG CGTCGCGCTC AACACCTGGG CCGTGAACCT GCGCTTCACC
GCTGCCGGGA CCGACAAGTT CGCCGACGTG ACGACGCGTC TCGCGACCCT GCCGACGTAC
GCCCAGTGGA TCTCCACGGA GAACCCGACC CTGGCACCGA ACATGTTCGC CATGGTCCTC
GACAACCAGG TCATCGGGGC GCCCGGTGTC ACGGCGACGA TCCCCGACGG TCGTGCCGAG
ATCACGGGCA GCTACACGCG CGAGACCGCG ACGGCACTGG CGAACCAGCT GAACTTCGGT
GCGCTCCCGC TCACCTTCGA GGTGCAGAGC GAGCAGCAGA TCTCGGCGAC CCTCGGCAGC
GAGCAGCTCG AGAAGGGCAT GATCGCCGGG CTCATCGGCC TCCTCCTCGT GGTCGTCTAC
TCGCTGTTCC AGTACCGCGC CCTCGGTCTC GTCACCGTCG CCTCGCTGCT CATCGCCGGG
CTGGTGACCT ACGGGATGAT CACCCTGCTG TCGTGGACGC AGGGATACCG CCTCTCCCTC
CCGGGAGTCG CCGGCCTCAT CGTCGCGATC GGCATCACGG CCGACTCGTT CATCGTGTAC
TTCGAACGCA TCCGTGACGA GCTGCGCGAC GGCAGGTCTC TGACGTCCGC GGTCGACACC
GGGTGGGACC GCGCGCGCCG CACGATCGTC GCCTCGGACA CGGTGAACTT CCTCGCTGCC
GTGGTGCTCT ACTTCCTCGC CGTCGGCGGG GTCCGCGGGT TCGCCTTCAC CCTCGGCCTC
ACGACGCTGG TCGACCTCAT CGTCGTGTTC TTCTTCACGC ACCCGCTGAT GAAGCTCCTC
GCCAGGACCC GGTTCTTCGC GGACGGGCAC CCGGCGTCCG GCCTCGACCC GCACCGCCTC
GGCGCGACGG GGGTCCGCTA CGCGGGCCGT GGCCGCGTGG TCACGCCCGC CACGGCGGCT
GCGACCCCGG GCCTCACCGA GGACCGCCCC GCCGAGCCCA CGGGCAAGAA GAAGAAGAAG
CAGCTGGTCC CCGCCGGCGC TGCCACGGCC GCGCCCACGA TGACCATCGC CGAGCGTCGT
GCCCTGGCCG CGGCCGAGGC TGCCGCGCAG AAGTCCGACG CTGCTGAGGC GTCCGACTCC
TCGGAGGCCG AGACCGAGCA CGACCCGGCG GGCACCCCGC CGGCTGACGA CACCCGGACC
GACGGCACGC CCGCGTCCGA CGAGCGCAAG GACGGGAACC TCTGA
|
|---|
| Protein sequence | MATTNRSTSR PGRSLIGLGI IVLVLFGSIG IGTWQSDASW SPKLALDLEG GTQIILQPVT
TDGQTVTSED INQAIAIIRQ RVDSSGVSEA EITSQGGSNI VVALPGQPSQ ETLDLVRESA
QMQFRPVLSF SMVAPTALPT EDPTTGPTAP TDVPTEDVAP EDGATTDAPE EPATDATTEP
AESGSGGGVA AATDPAVEPT TDAATEPAVE PTTDATEPAV EPTTDAEVPL PSNPSDLAQI
TPELLAEFQA LTCSPDASAA GTAPKDPASP IAVCSVDGTM KYILGPMEIA GTEIDSASSG
LQVNSQGVAL NTWAVNLRFT AAGTDKFADV TTRLATLPTY AQWISTENPT LAPNMFAMVL
DNQVIGAPGV TATIPDGRAE ITGSYTRETA TALANQLNFG ALPLTFEVQS EQQISATLGS
EQLEKGMIAG LIGLLLVVVY SLFQYRALGL VTVASLLIAG LVTYGMITLL SWTQGYRLSL
PGVAGLIVAI GITADSFIVY FERIRDELRD GRSLTSAVDT GWDRARRTIV ASDTVNFLAA
VVLYFLAVGG VRGFAFTLGL TTLVDLIVVF FFTHPLMKLL ARTRFFADGH PASGLDPHRL
GATGVRYAGR GRVVTPATAA ATPGLTEDRP AEPTGKKKKK QLVPAGAATA APTMTIAERR
ALAAAEAAAQ KSDAAEASDS SEAETEHDPA GTPPADDTRT DGTPASDERK DGNL
|
|---|
| |