Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hoch_5509 |
Symbol | |
ID | 8547922 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Haliangium ochraceum DSM 14365 |
Kingdom | Bacteria |
Replicon accession | NC_013440 |
Strand | - |
Start bp | 7553321 |
End bp | 7556485 |
Gene Length | 3165 bp |
Protein Length | 1054 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 646390182 |
Product | TonB-dependent receptor plug |
Protein accession | YP_003269885 |
Protein GI | 262198676 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.180232 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCGAACCT GTTCCCGGGT GATCATTCAT CCGGCGCGTT CTCGGCGCGC ACTCCACCTC TTTGCGGCCG CGCTGACGGC TGCGTGTTTG CTCCCGACCA CCGGCGTGAC CCCGGTCTAT GCTCAGGTCG CGACCACGGG CAGCTTGCGC GGCGTCATCA GCGACCGGGC CAGCGGCGCG CCCGTGGCCA ACGCCGTGGT CACGGTGCGC GGCCCCGCGC TCATCGGTTC GGCAGACGCC ACCACGGATG TCGACGGAGC GTACGAAATC AGCAATCTGC CGCCCGGCCT GTACACCCTG AGCGTGTACG CGGGCCAGGC GCAGGTGTCG CGCTCGGGCG TGCTCATCCA GCTCGGCAAG CAGGCGCGAA TCGACGTCCC CGTGAGCGAG CAGAGCATGG CCGGCGAGGT GGTCGAGATC GAGGGTCGGG TGCCCATCAT CGACCAGGGC TCGACCAAGG CCGGCGTCAC CATTACCAAC GACTACATGC GCAACGTGCC CACGGGGCGC AACTTCGACG AGGTCCTGGA AGTGGCCCCC GGCGCCCAGG TCGACCAGTT CGGCACCGGC TTCGGCGGCT CGAGCTCGCC CGAGAACAGC TACGTCATCG AGGGCCTCAA CGTCACCGGC GTCGGCTTCG GCCAGGCGCG GCTGACCCTG CCGCACGAGT TCCTCGAGGA GATCGAGGTC GTGAGCGGCG CCTACGGCAC GGAATTCGGA CGCTCGACCG GCGGCGTCGC CAACGTGCTC ACGCGCGCGG GCGGCGAAGA GCTCCGCGGC AGCGTGTTCG GCTACGTGAG CCCGGGCGCG CTCTCGGGCA CGCCGCGCAC CGTGGTCGAC GAGAGCAACG CCCTCACCTA TCGCCGCGAC CTGGTCGCCG ACACCGACTT CGGCGTCGAG GTCGGCGGTC CGCTGATCCC GGACACGCTG TGGTTCCACG CCGGCTTCAG CCCGTCGATC CGCCTGCGCA CCGCGGACAC GCTGATCGAG GGCCAGGCCG AGGACACCGA GGAGATCAAC AGCCAGACCT ATTACTTCAC CGGCAAGCTG TCGTACGCGG CCTCGCCCGA TCACGGCGGC TTCGTGTCGG TGTTTGGCAA TCCCAGCACA GACGAGCGCC TGTTCGACGA GTTCGCGGTC GGCAACCCCT ACACGCTCAA CTTCGAGGAC GACAACGGCG TGGTCGCCGG CGTGAGCCGC TGGACCTCGC GCTTCCCCGC GATCGACGGC GAGCTGACCG CGACCCTGGG CGTGTACCGC GGCCACGACG TCGAGGGCGC CAAGTACGGC AGCGCGCTCG ATCGCCAGGC CGTGCGCTTT TTGGCGCCGC GCCCGCTGGC CGACTTCGCC GACTTCCAGG ACGTGCCCGA GCGCTGCGGC GCCGACGGCT GCCAAGTGTA CAACTACCAG ATCGGCGGCC TCGACGTGTT CACCCAGGCC AAGACCCTGC GCCTCGGCGG CGGTCTGGTG TATCGTCAGA TCTTCGACGC CCTGGGCCGC CACCGGGTCA AGGTCGGCGC CGACGTCGAG GTCAACCGCT ACGACTCGCG CGCCGGCTTC AGCGGCGGCA CGCGCTGGTG GCTCGCGCCC GGCGGGTTCA TCGGGCTGCC CGTGGAGAAT GCCGCGCTGG GCTGGCGCTT CCTGCGCCTC GACGAGAACG GCGACCAGCC CTGCGGCCTC GACCTCGACC TCGACGGCGC GCCCGACTCG CGCTGCAGCT ATCAGACCGA CGGCTTCGAC GCCGACGCCC AGACCCTCAA CAGCGCGCTG TTTTTGCAGG ACTCGTGGAC CGTGCTGCCC AACCTCACCA TCGAGGCCGG CGTGCGCTAC GAGCGCCAAG ACGTGGGCGC GGCCGACCAG GTCGTGGGCC AGATCAACCC GGTGAGTGGC GACCCCATCG AGCAGAACGC GTTCGCGCTC AACAACCTGG CTCCGCGCGT CGGCGCCATC TACGACTGGA CCAACGAGGG CCGTTCGCGG GTTTTCGGAC ACTGGGGCCG CTACTACGAG TCGGTGCCCA TGGACCTCAA CGCCCGCGCG TTGTCCGGCG AAGTGGTCGA GATCAGCTTC TACGACGCCG CCGCGTGTAG CGACCCCTTC CGCCCCAAGA CCTACGACTG CGGCGCCGAG GGTCTGCTCG GCAACCAGCA GCTCGGCAGC GGCGGCAAGC TGATCGCGCC CGGCCTGCAG GGCCAGTACA TGGACGAGAT CGTCCTGGGC GTCGAATACG AGCCGCTGGC CAACCTCAAG GTCGGCGCCG TGTACACGCA CCGCGACCTC GGCCGGGTCA TCGAGGACGT CTCGCCCGAC GGCGGCGTCT CGTTGGTGCT GGCCAACCCC GGCGAGTACG ACGCCGGCGC GGTCGCCGAT CTGCGCTCGC AGGCCGACGC CGCCCGCGCT GCCGGCAACA TGGACGAGGC CGCGCGCCTC GATCGCACCG CCACCCTGGC CGAGGGCGTG GGCGACTTCG ACCCGCCCAA GCGCAGCTAC GACGCGATCG AGCTGAGCGC GGTCAAGCGC TTCTCCGACG ACCTGATGGG CCGCTTCTCG TACGTGTACT CGCGGCTCGA GGGCAACTTC GCCGGTCTGT TCTCGCCCGA CACCGGCCAG CTCGACCCGA ACTTCACCTC GCGCTACGAC GTGCCCGAGC TGATGACCAA CCGCTACGGC CGCCTGGCCT CGGACGCGCC GCACCAGATC AAGCTCGACG CCTTCTATCA CCTGCCGATT CCGGCCGAGC TCGGCGCGCT GATCGTCGGC GGACGCTTCC GCGGCCGCTC GGGACGCCCG CACAACTACC TGGCCGATCA TCCCATCTAC GGCGCCAAGG AGGTCGTGCT GTTGCCGCGC GGCAGCGGCG AGCGCAACGA CTTCGTGACC TCGGTCGACC TGCAGCTCAC CTACGGCCGG GCGCTGAGCG AGGACATGGG CCTCGAGGTG TTCGTGTCGG TGTTCAACCT GCTGAACCAG AAGACCGCGC TGCGCCGCGA CGAGCAGTAC ACCTTCGACT ATCCCAACCC GGTCGGCGGC GGCAGCGTCG AGGACCTCGA GCACGTCAAG TCGCCCGGCA CCAACCAGGC GCTGTCGACC AACGCGAACT TCGGCAACCC GATCGAGTTC CAGGACCCGA TCGGCGTGCG CCTGGGCGCT CGCTTCACCT TCTGA
|
Protein sequence | MRTCSRVIIH PARSRRALHL FAAALTAACL LPTTGVTPVY AQVATTGSLR GVISDRASGA PVANAVVTVR GPALIGSADA TTDVDGAYEI SNLPPGLYTL SVYAGQAQVS RSGVLIQLGK QARIDVPVSE QSMAGEVVEI EGRVPIIDQG STKAGVTITN DYMRNVPTGR NFDEVLEVAP GAQVDQFGTG FGGSSSPENS YVIEGLNVTG VGFGQARLTL PHEFLEEIEV VSGAYGTEFG RSTGGVANVL TRAGGEELRG SVFGYVSPGA LSGTPRTVVD ESNALTYRRD LVADTDFGVE VGGPLIPDTL WFHAGFSPSI RLRTADTLIE GQAEDTEEIN SQTYYFTGKL SYAASPDHGG FVSVFGNPST DERLFDEFAV GNPYTLNFED DNGVVAGVSR WTSRFPAIDG ELTATLGVYR GHDVEGAKYG SALDRQAVRF LAPRPLADFA DFQDVPERCG ADGCQVYNYQ IGGLDVFTQA KTLRLGGGLV YRQIFDALGR HRVKVGADVE VNRYDSRAGF SGGTRWWLAP GGFIGLPVEN AALGWRFLRL DENGDQPCGL DLDLDGAPDS RCSYQTDGFD ADAQTLNSAL FLQDSWTVLP NLTIEAGVRY ERQDVGAADQ VVGQINPVSG DPIEQNAFAL NNLAPRVGAI YDWTNEGRSR VFGHWGRYYE SVPMDLNARA LSGEVVEISF YDAAACSDPF RPKTYDCGAE GLLGNQQLGS GGKLIAPGLQ GQYMDEIVLG VEYEPLANLK VGAVYTHRDL GRVIEDVSPD GGVSLVLANP GEYDAGAVAD LRSQADAARA AGNMDEAARL DRTATLAEGV GDFDPPKRSY DAIELSAVKR FSDDLMGRFS YVYSRLEGNF AGLFSPDTGQ LDPNFTSRYD VPELMTNRYG RLASDAPHQI KLDAFYHLPI PAELGALIVG GRFRGRSGRP HNYLADHPIY GAKEVVLLPR GSGERNDFVT SVDLQLTYGR ALSEDMGLEV FVSVFNLLNQ KTALRRDEQY TFDYPNPVGG GSVEDLEHVK SPGTNQALST NANFGNPIEF QDPIGVRLGA RFTF
|
| |