| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_2415 |
|---|
| Symbol | |
|---|
| ID | 8544801 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | + |
|---|
| Start bp | 3341604 |
|---|
| End bp | 3343103 |
|---|
| Gene Length | 1500 bp |
|---|
| Protein Length | 499 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 646387114 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003266845 |
|---|
| Protein GI | 262195636 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00358029 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.14874 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGAAA ACGATAAAGA CAAAGACAAG ACCGAGCTCG AGTCCGAGAA GACCGAGCAC
GAGTCCGAAC TCGAACCCAA GGCCGAGTCC GAGGTCGAGG CGGAGGCGAA AGCCGAGGCC
GCGGCGGCGG ACGATGCCGA GGAGCCGGGC GGCACCAGCC AGGGCGGCAG CCCCTACGGC
GACCCCGCGT ACAGCGAGCA CGACGACGTG CCGGTGCGCG AGCCGGAGGC GGGCGAGGCG
GCCGCTGCCG GTGCCGGTGA TGCCGGTCCC GGACAGCCGG ACGAAGACGA GGCCGACGGC
GAGCTGTACG GCTTGCTGGC CGAGTTCGAC TCCCCCGGCG CGCTGATCGC GGCGGCGACC
AAGGTCCGCG ACGCCGGCTA CCAGAACTGG GACTGCTACA GCCCGTTCCC GGTGCACGGC
CTCGATCCCG CCATGGGCAT CAAGCGCACG ATCCTGCCCT GGATCGTGTT CGCGGTCGGC
CTGTGCGGTC TCGGTGGTGG TCTGCTGCTG CAGTTCTGGA CCAACGCCGT GGATTGGCCC
TGGATCGTCA GCGGCAAGCC CTTCTTCAGC CTGCCGGCCA ACATCCCGAT CACCTTCGAG
GCGACCATCC TTCTGTCGGT GTTTGCCTCG TTCTTCGGCA TGTGGGGCCT CAACAAGCTG
CCCCAGCCCT GGCATCCCTT CTTCAAGAAG GAGCGCTTCC TGCGCGCCAC CGATGACCGC
TTCTTCATCG GCATCGAGGC CGCGGACAAG AGCTTCCAGC GCGGCAAGAC CCAGGCTCTG
CTCGAGACCT CGGGCGCGCT CGCGGTCGAG ACCTGCTACG TGAGCCGCGA CCCGGCCACC
CGCAAGGTGC CGCGTCCGGT GATGGCCTTC ATCATCATCT CCTGCGTGGC CGCGCTGATT
CCCTTCGCGC TCGTCGCCAA GGCCCGGGCC ACGCACTCCT CGACGCCGCG CGTACACGTC
TGGTCGGACA TGGACTTCCA GCCCAAGGGC CTGACGCAGA CCGCGAGCGT GGTGTTCGCC
AACGGCCGCA CCAGCCGCCA GCCGGTCGCC GGCACGGTGG CGCTGGGTCA GCTCGACACC
GACGACCTGT TCTTCAAGGG CCTGGCCAAC AACGCTTGGT CGCCCGTGTT CCCGCCGCAG
ATGCCGATGA ACGCGGCCAC GCTCGAGCGC GGTCGCGAGC GCTTCGGCAT CTACTGCCAG
CCCTGCCACG GCGCCTCCGG CGATGGCAAC GGCATGATCC ATCAGCGCTC GCTCCAGCTC
GGGCGCTCGG TCCGCGGCTG GGTGCAGCCG ACCAATCTGC ACCAGAGCAG CGTCGTGCGG
CAGCCGCACG GCCAGCTCTT CAACACCATC ACCAACGGCA TTCGCAACAT GCCCGGTTAC
GCCGCGCAGA TTCCGCCGGC CGACCGCTGG GCCATCGTGC TCTACGTACG TGCCCTGCAG
CGCAGCCAGA ATGCCTCCAT CGACGATGTG CCCGCCGATC AGCGGCAGCA GATTCGCTAA
|
|---|
| Protein sequence | MSENDKDKDK TELESEKTEH ESELEPKAES EVEAEAKAEA AAADDAEEPG GTSQGGSPYG
DPAYSEHDDV PVREPEAGEA AAAGAGDAGP GQPDEDEADG ELYGLLAEFD SPGALIAAAT
KVRDAGYQNW DCYSPFPVHG LDPAMGIKRT ILPWIVFAVG LCGLGGGLLL QFWTNAVDWP
WIVSGKPFFS LPANIPITFE ATILLSVFAS FFGMWGLNKL PQPWHPFFKK ERFLRATDDR
FFIGIEAADK SFQRGKTQAL LETSGALAVE TCYVSRDPAT RKVPRPVMAF IIISCVAALI
PFALVAKARA THSSTPRVHV WSDMDFQPKG LTQTASVVFA NGRTSRQPVA GTVALGQLDT
DDLFFKGLAN NAWSPVFPPQ MPMNAATLER GRERFGIYCQ PCHGASGDGN GMIHQRSLQL
GRSVRGWVQP TNLHQSSVVR QPHGQLFNTI TNGIRNMPGY AAQIPPADRW AIVLYVRALQ
RSQNASIDDV PADQRQQIR
|
|---|
| |