| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_2122 |
|---|
| Symbol | |
|---|
| ID | 8419972 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfohalobium retbaense DSM 5692 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013223 |
|---|
| Strand | + |
|---|
| Start bp | 2412990 |
|---|
| End bp | 2414219 |
|---|
| Gene Length | 1230 bp |
|---|
| Protein Length | 409 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 645038715 |
|---|
| Product | putative ABC transporter solute-binding protein |
|---|
| Protein accession | YP_003198984 |
|---|
| Protein GI | 258406242 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4134] ABC-type uncharacterized transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.708087 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCATTGG TTTTTCGTTT TGGCCTGGTT GCAGGAGTAC TGGGATGCCT GTTGTGCATT
GCCGGATGCC AGCAAACAGC ATCCGAACCG GATTGGCGCA CAAAGGATTT TGAGCGCATT
ATCGAGGCGG CCCGCGGCAC CACAGTGCGC TGGTACATGT ACGGTGGCTG GCCCCATGTC
AATGAATGGG TCGATACCTA TGTCGCCCCG GCCATGCAGG AGCGTTACGG AATCAGTGTC
AAACGCGTTC CCATGAACGC GCCTGTTTTT GTCAATAAAT TGATCAACGA AAAAAGTGCC
GGCAAAGACC CCGGCACCAT TGATCTGGTC TGGATCAACG GCGAAAATTT TAAGGCCACC
AAGAATGCAG GGGCCTTGTG GGGCCCCTTT GCTGAGCAGC TCCCGAATTG GCAGCGGTAT
GTCGACCCTT CTACCGTGGC CCAGGACTTC GGCTTTCCCA CAAAGGGGTA TGAAGCCCCT
TGGGGCCGGG CCCAATTCGT CTTGATCTAC GATGCCAAAC GCACGCCCAA TCCGCCGCGC
TCAGCAGAAA GTCTGCGCCG ATGGATCCAG GACCACCCTG GCCGTTTCAC CTATCCACAA
CCGCCGGATT TCACCGGATC GGCCTTTGTC CGTCAGCTCT TCTACGCCAC CACAGGTGGG
CACGAACAGT ATATGGACGG CTTCAACGCT ACCTTGTACG CTCGAAACGC CCCCCGCCTC
TGGGAGTATC TCAACGGGAT CGAGCCGTCA TTATGGCAAC AAGGCCGGAC ATACCCCCAA
AGCTCTGCAA CTCTGGACAC CTTGTTCGCC AGAGGCGAAG TCGATTTCAG TATGTCCTAC
CATCCGCCGC ACGCCCAAAA CAAAATCCTG GACGGCACTT TCCCCGCCAG CGTGCGGACG
GTGGCATTGG CCAACAATTC GATTGCCAAC ACCCACTACA CGGCCATTCC CTTCAATGCC
CCCAACAAAC CGGGGGCTAT GGTCCTGGCC AATTTTCTGC TCTCGCCCAC GGCCCAGCTC
TCGAAATACA AGCCTGAAAA CTGGGGGGAT TTTCCGGCCA TTGATCTCGA CCGCCTGGAC
CAGTCCCAAC GCCGACGCTT CGAGGATGTC GACCTCGGTC CGGCCACATT GAGCGCCGAG
ACCCTGGCTG AGCACGCGGT CCCTGAAATT CCCATCGGCT ATCTGGAAGC CATTGAAGCC
GATTGGAAGT CCCGAGTCCT GACCAATTGA
|
|---|
| Protein sequence | MPLVFRFGLV AGVLGCLLCI AGCQQTASEP DWRTKDFERI IEAARGTTVR WYMYGGWPHV
NEWVDTYVAP AMQERYGISV KRVPMNAPVF VNKLINEKSA GKDPGTIDLV WINGENFKAT
KNAGALWGPF AEQLPNWQRY VDPSTVAQDF GFPTKGYEAP WGRAQFVLIY DAKRTPNPPR
SAESLRRWIQ DHPGRFTYPQ PPDFTGSAFV RQLFYATTGG HEQYMDGFNA TLYARNAPRL
WEYLNGIEPS LWQQGRTYPQ SSATLDTLFA RGEVDFSMSY HPPHAQNKIL DGTFPASVRT
VALANNSIAN THYTAIPFNA PNKPGAMVLA NFLLSPTAQL SKYKPENWGD FPAIDLDRLD
QSQRRRFEDV DLGPATLSAE TLAEHAVPEI PIGYLEAIEA DWKSRVLTN
|
|---|
| |