Gene Dret_0962 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDret_0962 
Symbol 
ID8418782 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfohalobium retbaense DSM 5692 
KingdomBacteria 
Replicon accessionNC_013223 
Strand
Start bp1135314 
End bp1136429 
Gene Length1116 bp 
Protein Length371 aa 
Translation table11 
GC content59% 
IMG OID645037529 
Productintegrase family protein 
Protein accessionYP_003197828 
Protein GI258405086 
COG category[L] Replication, recombination and repair 
COG ID[COG4974] Site-specific recombinase XerD 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value5.86623e-11 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value3.58592e-10 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGCCGAGCA AGAAAAAACG GAACGGAAAG ATGGTCGGGT GGTTAGCGCA AGTACGGCGC 
CAAGGTGTGA ACAAAAGCCG AGTCTGCGCA ACACGGGAAG AAGCGTTGGC ACTCGAGGCG
CAGTGGAAGG CCGAGATCAA AATCGAGGAA GAACGGACAA CCCCCACGGT CTTGGAATGG
GGTAACGATT ACCTCGATTT TTCGAAAAAG CGTCACAGCG AGCGCACCTA CGAGGAAAAG
CGGTATGCGT TGGATTTATT GGTCCGAGCT GTTGGCGGCG AGACAGAAGT CCGGCATATA
ACCGTGGGCA ATGCCCTGGC TATCCTGGAC GATGTGGCTG AACGGCGGAG TGGGTATGTG
GCCAACCAAG TGCGCAAAAA TCTGCTTGCG GCGTGGAACT GGGGCAACCG CTATCTGGAC
AAGTGGCCGG ACATGGCGTC GCCATTTGGC AAGGTGGAGC GCTACAGCTA CCAGAAGCGA
CCGCGCGTCG TGCCACCCAT GGAGGATGTC CAGGCGGTGT TGGAAATCAT GGATGAAACC
GACCGGGCCA TGCTGCTCGC CTACCTCCAT ACGGCTGCGC GCCGGGATGA GATTTTCCGG
TTGCAATGGG AAGACATCGA TTTTGCAAAT TCCAAAATCG CCCTCTGGAC ACGGAAACGT
CAGGGTGGAG CGTGGGAAGC GGATCGAATC CCCATGACCC GGGATCTGCG CGAGGCCTTG
CTCAAAGAGC GGGGCAAAGG CAACGGCCAT GGGCTTGTGT TTTGCCGCGA AGGCGGCCGC
AAGTACCAAT ACCGGCGGCA TTGGATTCCC TATTGGTGTG ACCGGGCTGG GGTGCCCTTG
TTCAGCTTCC ACGGGATACG GCATCTGGCT GCAAGCTGGC TCGATGCTCA CAATGTGCCG
CTGACCACGA TCCAGGCGGT CCTGCGGCAC AAGTCAGCGA ACACCACGGC CAAATACCTG
CATGAACTGC GTGGCGTGCA GGCGGATCTG GATAATGTGT TCAGCGGCCA AAAAGCCAAG
GTCACGGAAT CGAGTAGGAG GGGGCCTTGC GGCCCCCGTC CTCTCACACC ACCGGGCATA
CGGTTCCGTA CCACGGCGGT TCACCTGACA CTTTGA
 
Protein sequence
MPSKKKRNGK MVGWLAQVRR QGVNKSRVCA TREEALALEA QWKAEIKIEE ERTTPTVLEW 
GNDYLDFSKK RHSERTYEEK RYALDLLVRA VGGETEVRHI TVGNALAILD DVAERRSGYV
ANQVRKNLLA AWNWGNRYLD KWPDMASPFG KVERYSYQKR PRVVPPMEDV QAVLEIMDET
DRAMLLAYLH TAARRDEIFR LQWEDIDFAN SKIALWTRKR QGGAWEADRI PMTRDLREAL
LKERGKGNGH GLVFCREGGR KYQYRRHWIP YWCDRAGVPL FSFHGIRHLA ASWLDAHNVP
LTTIQAVLRH KSANTTAKYL HELRGVQADL DNVFSGQKAK VTESSRRGPC GPRPLTPPGI
RFRTTAVHLT L