| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dret_0146 |
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| Symbol | |
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| ID | 8417950 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfohalobium retbaense DSM 5692 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013223 |
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| Strand | + |
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| Start bp | 189631 |
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| End bp | 190947 |
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| Gene Length | 1317 bp |
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| Protein Length | 438 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 645036711 |
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| Product | MiaB-like tRNA modifying enzyme YliG |
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| Protein accession | YP_003197026 |
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| Protein GI | 258404284 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0621] 2-methylthioadenine synthetase |
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| TIGRFAM ID | [TIGR00089] RNA modification enzyme, MiaB family
[TIGR01125] MiaB-like tRNA modifying enzyme YliG, TIGR01125 |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.00677283 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.468317 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGATTC ACGATCCCTT ACGGGTGTTT ACGATAAGTC TCGGTTGTCC CAAGAACCGG
GTGGACACGG AATTCCTTCT TGGCGCCCTG GGCGGGGCTT ATGCCCCGGC CCAGGACATC
ACCAGCGCGG ATGTTGTTTT GATCAATACC TGCGCCTTTA TCGAGCCGGC GGTCGAGGAG
TCGGTGCAAC AAATTCTTGA AGTGGCGGAT GATATCAGTG ATCTGGTGCC GCGCCCCCTG
TTGGCGGTCA CCGGCTGTCT GGTGGCCCGT TATGGGCAGG ATCTGAAAGC CGGGTTGCCG
GAAGTGGATC TCTGGCTTCC CCTTGCCGAG CAGGACCAGT GGGGTGAGCG CCTGGCCCAG
GCGCTGGGGC GTTCGTTTCC GGGGGGGCGT GAACGGATCC TGACTACCGG CCCGGCATCA
GCCTACCTCA AAATCAGTGA AGGGTGTGAC CACGCCTGCC GGTTTTGCAT TATCCCCCAG
TTGCGCGGCC CGCTCCAGAG CAGACCGGTC GAAGAACTGG TCCGTGAAGC GGGTTCGCTG
GTTGACCAAG GGGCGCGTGA ACTCGTTCTC GTGGCCCAGG ACGTGTCCAA TTACGGCCAG
GACCTGGGGA TGCGTCAAGG GCTGCAGCGG CTGGTGGAAG CGCTGTCGGC GGTGCCGGGA
CTGGACTGGA TCCGCTTGCT CTATCTCTAT CCCGTGGGCG TTACCACGGA GTTGCTGCGC
TTTTTGCGTG ACAGCGCCCC CCTCGTCGTC CCTTCCTTTG ATATCCCGCT GCAGCACGCC
CATCCGGATA TCCTGACCCA GATGGGCCGT CCTTTTGCCA GAGACCCGTA TCGGGTGATT
GCAACGGTCC GGGATGTTCT GCCACAGGCG GCGCTGCGAA CGAGTCTCAT AGTTGGTTAT
CCCGGGGAAA AAGAAGCCCA TTTCGCGTAT CTGCGTCAGT TTGTCCAAGA GGTGCGCTTC
CACAATCTCG GTGTCTTCCC CTATTACGCG GAGGAGGGAA CGCCTGCAGC GACACTGCCG
GATCAGGTTC CCGAGGCGGT CAAGAACGAC CGACGCGAGC AGATCATGGG TGACCAGGCG
CAGATAAGCG AAACGATTCT CGAGAGCTGT CAGGGAACCA CCATGGATGT GCTGGTGGAG
CGACCGGATC CGCACTGGCC GACCCTGTTT CAGGGCCGGG TCTGGTTCCA GGCGCCGGAG
GTGGATGGCG TGACCTATGT CAGCGGGCAC AGTCTTCAGG CCGGCCAACT GGTGCACGCC
GAGATCGAGG AGAGCAAGAC GTATGACCTT GTGGCGCTTG TCCCGGAAGA AAAATAA
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| Protein sequence | MAIHDPLRVF TISLGCPKNR VDTEFLLGAL GGAYAPAQDI TSADVVLINT CAFIEPAVEE
SVQQILEVAD DISDLVPRPL LAVTGCLVAR YGQDLKAGLP EVDLWLPLAE QDQWGERLAQ
ALGRSFPGGR ERILTTGPAS AYLKISEGCD HACRFCIIPQ LRGPLQSRPV EELVREAGSL
VDQGARELVL VAQDVSNYGQ DLGMRQGLQR LVEALSAVPG LDWIRLLYLY PVGVTTELLR
FLRDSAPLVV PSFDIPLQHA HPDILTQMGR PFARDPYRVI ATVRDVLPQA ALRTSLIVGY
PGEKEAHFAY LRQFVQEVRF HNLGVFPYYA EEGTPAATLP DQVPEAVKND RREQIMGDQA
QISETILESC QGTTMDVLVE RPDPHWPTLF QGRVWFQAPE VDGVTYVSGH SLQAGQLVHA
EIEESKTYDL VALVPEEK
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