| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_1338 |
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| Symbol | |
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| ID | 8414225 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 1505583 |
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| End bp | 1506866 |
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| Gene Length | 1284 bp |
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| Protein Length | 427 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 645022937 |
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| Product | seryl-tRNA synthetase |
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| Protein accession | YP_003180353 |
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| Protein GI | 257785136 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0172] Seryl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00414] seryl-tRNA synthetase |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00311598 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCTTGATA TCAAATTTGT GCGCGAGAAT CCTGACCTCG TAGATAAGGC TTGCGAGTCT
AGGCAAAACG CCCATTGGGA TCGCGAGAAG TTCTTTGAGC TTGATGAGGA ACGTAGAAGC
GTAATTAGTG AGGTAGAGAC GCTTCAGGCA GAGCGCAATG CTGTTTCTAA GCAGATTGGC
CTTCTTATGC GTGAGGGCAA GAAGGAAGAG GCTGAGGCAG CTAAGGAGCA GGTAGCAGCT
AACAAAGATC ACATTGCTAG GCTTGACCAG CGTCGCGGTG AGGTTGAGGA GGAGCTCACA
GCCCTTGTTG CAGCTATTCC AAACATTCCT GACGCATCTG TTCCTTATGG CAAAGACGAC
TCTGATAATC CAGAGGTTCG CAAGTGGGGA GAGCCAACTC AGTTTGACTT TGAGCCAAAA
GCACACTGGG ACCTTGGTCC TGAACTGGGC ATGATTGACT TTGATCGTGG TGTAAAACTT
GCAGGAACTC GTTTCTACCT TCTTGGTGGT ATGGGCGCTC GTATGGAACG TGCGCTTATT
AACTTCATGA TTGATACGCA TAATCAGGCA GGCTTCAAAG AGTGGTGGCC ACCAGTCATT
ACTAACCAGG ATTCACTCTA TGGCACTGGT CAGCTTCCAA AGTTTGAGGA AGATTTGTAT
CACGTTCAGC CTGACCTTTA CCTCATTCCA ACTGCTGAGG TTCAGCTCAC TAACATTCAC
CGTGATGAAA TTCTGGATGC ATCTCAGCTT CCTTTGCTCT ATACCGCGTT CACTCCATGT
TTCCGCGAGG AGGCAGGTTC AGCTGGTCGA GACACTCGTG GTATCATCCG CGTTCACCAG
TTTGACAAGG TAGAGATGGT TAAGTTTGCA AAGCCTGAGG ATTCCATGAA TCAACTTGAG
TCTATGGTTC AGGAAGCCGA GAAGATCCTT CAGCTTCTGG GTCTTCCTTA TCATGTGGTT
ACTCTCTGCA CTGGCGACAT TGGATTCTCT GCATGTAAGT GCTATGACAT CGAAGTCTGG
CTCCCAAGCT ATAACGCATA CAAGGAGATT TCTTCTTGCT CAAACTGCTG GGATTTCCAG
GCACGTCGTG CAAATATTCG CTATAAGGAT CCAGCCGAAT TTAAGGGCAC CCGCTTAGTT
CATACACTTA ATGGCTCGGG CCTGGCGGTT GGTCGTACTA TGGCAGCAAT TATGGAGAAT
TATCAGAACG CGGATGGCTC CGTTACTGTT CCTGAGGTGC TTCGCCCTTA CATGGGTGGC
ATTGAGGTTA TTCGTCCAGA ATAG
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| Protein sequence | MLDIKFVREN PDLVDKACES RQNAHWDREK FFELDEERRS VISEVETLQA ERNAVSKQIG
LLMREGKKEE AEAAKEQVAA NKDHIARLDQ RRGEVEEELT ALVAAIPNIP DASVPYGKDD
SDNPEVRKWG EPTQFDFEPK AHWDLGPELG MIDFDRGVKL AGTRFYLLGG MGARMERALI
NFMIDTHNQA GFKEWWPPVI TNQDSLYGTG QLPKFEEDLY HVQPDLYLIP TAEVQLTNIH
RDEILDASQL PLLYTAFTPC FREEAGSAGR DTRGIIRVHQ FDKVEMVKFA KPEDSMNQLE
SMVQEAEKIL QLLGLPYHVV TLCTGDIGFS ACKCYDIEVW LPSYNAYKEI SSCSNCWDFQ
ARRANIRYKD PAEFKGTRLV HTLNGSGLAV GRTMAAIMEN YQNADGSVTV PEVLRPYMGG
IEVIRPE
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