| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_1003 |
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| Symbol | |
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| ID | 8413875 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | - |
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| Start bp | 1131792 |
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| End bp | 1133582 |
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| Gene Length | 1791 bp |
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| Protein Length | 596 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 645022592 |
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| Product | transcriptional regulator, MarR family |
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| Protein accession | YP_003180023 |
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| Protein GI | 257784806 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4750] CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCACTGA CAAAGAACGT TTTTTCCGTA CTTAAAACCA TCGCTCAGTC TAACGAGAAG
TTCAATCAGA GGCAGCTCGC AGAACATACA GACCTTTCCC TTGGATCTGT TAACTCAGCA
GTCAAAACAC TGGAGGATCA GGGTCTTATT GACGATAATC TAATTACTTC AAAGGGTCTC
GAAGCTCTGA AGCCTTACGA GGTCAAGAAT GCCATTATTA TGGCAGCTGG TCTGTCTTCT
CGCTTTGCAC CAATCTCTTA TGAGAAGCCA AAAGGTGTCT TGAAGGTTCG AGGAGAAGTT
CTCATTGAGC GCCAGATCCA TCAGCTTATG GAGGCTGGCG TTACCGATAT CACCGTAGTT
GTTGGCTATA AAAAGGAGTA TTTCTTCTAC CTGACTGCAA AGTATGGTGT CAAGATTGTT
GTAAACCCAG ATTACGCAAC GAGAAACAAT AACTCTACAC TCTGGTATGT CAAAGAGCAG
CTGGATAACA CCTATATTTG CTCTTCTGAT GATTATTTTA CTGAGAATCC TTTTGAGCAC
TATGTTTTTG AGGCCTACTA TTCAGCAACT TATGTGGCAG GAGAAACTGA CGAGTGGTGT
CTTAAAGAAG GCCGTGGTGG ACGTATTGCC GGCGTAGAAA TTGGTGGCTC TAACTCTTGG
ATTATGCTTG GACACGTCTT CTTTGACAGA CAATTCTCAA GGAAGTTTGT AGATATTCTT
GAAGAGGTTT ACGACAAGCC AGAGACTGTT GATATGCTCT GGGAAGAGAT TTACGTCCGT
CACATCAAAG AGCTCTCTAT GAGCATTAGA AAATATCCTG ACGGCGTGAT TTATGAGTTT
GACTCCCTTG ATGAGCTGCG TCAGTTTGAC CCAGCCTTCA TTGAGAATAT AGATTCAGAG
ATTTTTGACA ATATTGTTTC TGTACTTCAC TGCCAGAAGA AGGACATTCA CGGCTTCTAT
CCACTGAAGC AGGGTCTTAC CAATCTGTCT GCTCACTTTA TTGTGGGCCA TGGTGAAGAC
GCTCAGGAGT ATGTTTATAG GCATCCAGGT GTTGGCACCG AGAAGCTTGT TGATCGCGCT
GCTGAAGAGG CTGGTCTTCG TCTTGCTCGT GAGCTGGGTC TTGATAGCAC CTTTATTTAC
GAGGATCAAA AAGAGGGTTG GAAGATTTCT AAGTTTGTAA AGAACGCTCA GAACCTTGAT
CCTCATAATC CTAAGCAGCT TAAACGTGCA ATGGAGATGG GGCGCAAACT GCATCACAGT
GGTGCCTCAC TTGATCGTTC CTTTGACTTT GTCAATGAGG GTCTTAATTA CGAGAAACTC
TTGCTTGAAG AGGGTCCTAT TGAGATTCCT GGCTATTATG ATCTTCGTGA AAAGGTCCTG
CGCTTGAAGA AGTATGCAGA TGCCGATGAG TATCCAGTTG TTATTTCTCA CAATGACTTC
TTCTATCTGA ATTTCTTGAT TGATGAGTCA GACACCTACA GCCTTATTGA CTGGGAATAT
GCAGGAATGT CAGATGAGGC TAATGACTTT GGTACCTTCG CAGTTTGCTG TGAGCTTACT
GACGATGAAG CTAATGCTGC TATTGATTAC TACTTTGGAA AAGTGGCAAC TTTTGAGCAA
CGTAGACACT TCTGGAGCTA TGTAGTCTTT GCCGGTTGGT GCTGGTATCT TTGGTCTCTG
GTTAAGGAAG CAGAGGGCGA GAACGTAGGC GAGTGGTTCT TCATTTACTA TCGCTACGCT
GCAAACAATA TTGATCGTGT TCTTTCTTGG TACGAAGACG CTCAAAACTA A
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| Protein sequence | MALTKNVFSV LKTIAQSNEK FNQRQLAEHT DLSLGSVNSA VKTLEDQGLI DDNLITSKGL
EALKPYEVKN AIIMAAGLSS RFAPISYEKP KGVLKVRGEV LIERQIHQLM EAGVTDITVV
VGYKKEYFFY LTAKYGVKIV VNPDYATRNN NSTLWYVKEQ LDNTYICSSD DYFTENPFEH
YVFEAYYSAT YVAGETDEWC LKEGRGGRIA GVEIGGSNSW IMLGHVFFDR QFSRKFVDIL
EEVYDKPETV DMLWEEIYVR HIKELSMSIR KYPDGVIYEF DSLDELRQFD PAFIENIDSE
IFDNIVSVLH CQKKDIHGFY PLKQGLTNLS AHFIVGHGED AQEYVYRHPG VGTEKLVDRA
AEEAGLRLAR ELGLDSTFIY EDQKEGWKIS KFVKNAQNLD PHNPKQLKRA MEMGRKLHHS
GASLDRSFDF VNEGLNYEKL LLEEGPIEIP GYYDLREKVL RLKKYADADE YPVVISHNDF
FYLNFLIDES DTYSLIDWEY AGMSDEANDF GTFAVCCELT DDEANAAIDY YFGKVATFEQ
RRHFWSYVVF AGWCWYLWSL VKEAEGENVG EWFFIYYRYA ANNIDRVLSW YEDAQN
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