Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Apar_0870 |
Symbol | |
ID | 8413736 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Atopobium parvulum DSM 20469 |
Kingdom | Bacteria |
Replicon accession | NC_013203 |
Strand | - |
Start bp | 965753 |
End bp | 969250 |
Gene Length | 3498 bp |
Protein Length | 1165 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 645022453 |
Product | UvrD/REP helicase |
Protein accession | YP_003179890 |
Protein GI | 257784673 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.129938 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTGATA CACGTTATAC GCCTGGTCAA GAGAAGACCA TCAAGACGCT TGATAAGCCT CTTTTTGTTG CAGCAGGTGC TGGTTCAGGA AAAACTTTTA CGCTTACACA GAGAATTGTG TGGGCTTTAA AAGAAGGCTC TGGAGCTGAT GGAAAGCCGT ACTTGAGTAG TCTTGACCAG GCATTGATTA TTACGTTTAC CAATGCTGCA GCTACAGAAA TTAAGGAACG CGTTAGGGAA GCTTTAGAAA AAGAAGGCCT GCATAGCGCT GCGTTGCAGG TTGATGATGC GTGGATTAGT ACTATCCACG GTATGTGTAG CAGAATCTTA AAGATCCATG CACTTGATTT GGATCTTGAT CCTGAGTTTG AAATCATTGA CGACATGACC AGAAATCAGC TGGTTACCAT ATCTATTGAA GAAGTACTCA GGGAGCTTTC TCAAGATGAA AGCTATGCTG AATTCCTTTC TACTTACGCA GGGAACAGAG ATGCGCTGAA GTCCCGTATT GAAACGCTGA TCTCGTATGC TCAGTCATCT CCTCTAGGAA TAGATTCTAT TTCGTTTGTA GGGGACAGCT CTGACCTGGA TGTTCTAAAA GCAGAGCTTG AGAGTTTATG TGGTGCACTT GAAGCGTTCA AGGCCGCAAT TGCTGAAAAG AAACCAGATG AAGCAGAGCA GCTACAGAGT GTTCAATCTG AGCTTTTAAG TAAATTGCAG CAACACTTGG TCCTCTCGCT CACTGATTTT GACCAGGCGT TTTGGGAGGC TCTGGGAAAA GCCGTCAAGG CCGTTCGATC TTCAAAAGAA ATAAAAATGG TAAGAGATGA AGCTGTGTAC CAGCTTAAAG TTTGTAGCTC TTTATTTGGG CTTATTCAGG ATGTGTCTGA GGGTCAACGT CTGAAAGATG TTACAGAGCA GGTCTACAAG CTCTTTAAAC AGAAGAAACT TGCTATTGGC GGCCTTGATA ACGATGATCT TTTGCATCTA ACGGCAAAGG TGTTTGAAGA GCATCCGGAG ATTGCGGCTG TTTACACAGA TAAATTCAAG CTTGTAATGG TTGATGAGTT CCAAGATACA GACCAGCAGC AAGTGCAGAT GATTAAGAGT CTCTCGGGTA AAGATGCCCA ATATCTCACA ACAGTTGGTG ACGCGCAGCA GTCAATTTAT CGTTTTCGCG GCGCTGATGT TGATGTGTTC TTCAGACGTC AAGCAGAGGT TCCAGAAGAT TTACAACCCC GTCTTGTAGA TAATTTCCGC AGCCATAATG AGATTTTGCG ATTTGTTGCA AAAGTTTGTA GTGCTGATGG CATGATTGCT GACTTTATGG ATCTGTCCGC TGGGCGAGAA GAGCCTACAA CTCCGTTCAT TGCTCATTCA CCACGAGTGT ATTTTGAAGT AACAAAATTT GTAAAGTCAG GAAGCTCTAA GCCGGGCGAT GATATTTCAA GAAAACAACT TGTCGCCCAT CAACTTGCGG ACAGAATTAA CACGCTTATG CAGGATGAGA ATATCCAAGC AAAAGATGTT GCAATTTTGA TGTCATCGGT TAAAGAGGCA CAGCCTTATA TTGAGGCACT TCGTACCTTT GGAATTGAAA GCGTGGTTTC TGGAGCTTCA ACTTTTGGTG AGCAGCCTGA GGTTGAACTG ATTGGCAGTC TTTTACAGAC ACTCGCAAAT ATGTACGATT CATACGAAGG ACTATTTCCT GTACTCTCGA GCGAAATTTT TAATCTTGAT GCGTCAGATT TGCTTCTACT AGGTACTAAT TTTGGAGAAA ATGGACAGAA GATTACTAAT AGAGATATCG CGGAGTCATT GGTAAATGAC GCGTTTAATC CACCTTTTGA GATAAGTCTG AAGCTTAAAA ATGCTTTAGA GATTTTGAGT GATGCTCGTA GCTCCCTCTC AAATAATAGA GTTTCAGACG TTCTTAAAAA AGTAGTTCTT GATGCTGGAT GGATTTCTCG CCTTCAAAAT AAGGGCAATG AGGGACAGTC AAAGATTGCA AATATTTTTG CAGCTCTTGA GCAGATTGAT AGTTTGCAAA AGGAGTTAAG CGTTGGTATT GCTTCAGTTG CAAAGGCATT TAGTGAGTGG TGCGGTACGG CTAAAGAGTC ACCAAAGGTG CTTCATAGCA GCACTCAAAA TGCAGTCACG TTTATGACTA TTCACGCATC TAAGGGATTG GAATTTCCTG TTGTTGCTGT TGTGGGGGCA GTTTCTGGTC CTAAGGCATC AGCTGGCGGT GAACCATTTT TGCATGTTAA AAAAGATAAT TCGTATCAAA TTGCATTCTC TAGCAGTTCT AAAAAACTCA AAAATTTGTA TGACGGCTGT CATGAGGTTC CTACAAGTAT TGATGAATGT AAGAATCTTC TTAAGTGGAG AATGTTCTTG GAGGCTCAAG AGAATGAGGC TGAAGAGCAG GAGCAAAATC GCTGTTTGTA TGTTGCTCTA ACACGCGCTC GAGAAGCAGT CATTCTTACC TCAACTATTG ATCTCACTAA AGAGGGAATT AGTCCCCGTT ATACACGCAA GATTACAGAT GCCTTGTTTG AAGAGACACC ACTTTCTGCT GGTGAGCATT TATTTGAATA TGGCGGCAAT CTTGCTGGTT GCATGCGTGT GGTTGAGGGT TCTGGCAAGA AGGATGAGCC GATTCAGGTT GAAGGTTTAG AGTTGGTTGA ACCTTCTGAT GTCAACCCAA GAGAAGAGAA ATACTCTCAA GCTGTTGAAA CGTTTGACAT TTATGAAAAG GCAGAACTAA GCGTTGCCTC AGAGACTACG TATGACCAGC GAAAAGGCTT CTTTAGTTAT TCATCAGCTC ACCAACAAAT GGCAGAGAAT TTTGAGAGTG AGAATAACCA AAAGCTTGAG GAAGAATTCA AGGGAGTAAG TCAAGGACAT GAGGCAGACA ACCCTCAACC AGCAACTGAA GCTTCCGTTG TTTTGCCTGG CACATTAGCT GATGATGGAG TAGACCCAAC CAGCCTTGGT TCAGCCTTCC ACGAGCTTGC TCAGATTATG GTTGAGACTC AGTCTAAGGT TGATGAACAA ATTATTGATA GATTGTGCTT GAAGAATAGC GTTCCTCAGC GTGCGGTATC ACGAGTCAAA CAAGCACTTG AATTGTGGAG TAACTCTGAA ATAAGACAAG AAGCTTTAGC TCATGATGTG GTTATTGCGG AGTCTCCCTT TACGCTGCAG GTTGATTCTG AATATGGGAA CTATGTAGAA GGAGCTATCG ATCTTCTCGC TTATAATAGG GGAAGCAAAG ATGCGCTGGT AGTTGACTAT AAAACGGGTG ATAAGGGCCT TAGTGCCGCT CAAATTTATG AGCATCATCA GATGCAAGCA AACTTCTATG CTTACGTTTT GATGCAACGT GGATTTACTA AGGTTGAGTG CGCGTTTGTC TGTGTTGAGA TTGAAGAGGC TGGTCAGCCA CACGTTGCTC GATACGCATT TGATGCAAAC CATCAACCAC AGCTTTAA
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Protein sequence | MADTRYTPGQ EKTIKTLDKP LFVAAGAGSG KTFTLTQRIV WALKEGSGAD GKPYLSSLDQ ALIITFTNAA ATEIKERVRE ALEKEGLHSA ALQVDDAWIS TIHGMCSRIL KIHALDLDLD PEFEIIDDMT RNQLVTISIE EVLRELSQDE SYAEFLSTYA GNRDALKSRI ETLISYAQSS PLGIDSISFV GDSSDLDVLK AELESLCGAL EAFKAAIAEK KPDEAEQLQS VQSELLSKLQ QHLVLSLTDF DQAFWEALGK AVKAVRSSKE IKMVRDEAVY QLKVCSSLFG LIQDVSEGQR LKDVTEQVYK LFKQKKLAIG GLDNDDLLHL TAKVFEEHPE IAAVYTDKFK LVMVDEFQDT DQQQVQMIKS LSGKDAQYLT TVGDAQQSIY RFRGADVDVF FRRQAEVPED LQPRLVDNFR SHNEILRFVA KVCSADGMIA DFMDLSAGRE EPTTPFIAHS PRVYFEVTKF VKSGSSKPGD DISRKQLVAH QLADRINTLM QDENIQAKDV AILMSSVKEA QPYIEALRTF GIESVVSGAS TFGEQPEVEL IGSLLQTLAN MYDSYEGLFP VLSSEIFNLD ASDLLLLGTN FGENGQKITN RDIAESLVND AFNPPFEISL KLKNALEILS DARSSLSNNR VSDVLKKVVL DAGWISRLQN KGNEGQSKIA NIFAALEQID SLQKELSVGI ASVAKAFSEW CGTAKESPKV LHSSTQNAVT FMTIHASKGL EFPVVAVVGA VSGPKASAGG EPFLHVKKDN SYQIAFSSSS KKLKNLYDGC HEVPTSIDEC KNLLKWRMFL EAQENEAEEQ EQNRCLYVAL TRAREAVILT STIDLTKEGI SPRYTRKITD ALFEETPLSA GEHLFEYGGN LAGCMRVVEG SGKKDEPIQV EGLELVEPSD VNPREEKYSQ AVETFDIYEK AELSVASETT YDQRKGFFSY SSAHQQMAEN FESENNQKLE EEFKGVSQGH EADNPQPATE ASVVLPGTLA DDGVDPTSLG SAFHELAQIM VETQSKVDEQ IIDRLCLKNS VPQRAVSRVK QALELWSNSE IRQEALAHDV VIAESPFTLQ VDSEYGNYVE GAIDLLAYNR GSKDALVVDY KTGDKGLSAA QIYEHHQMQA NFYAYVLMQR GFTKVECAFV CVEIEEAGQP HVARYAFDAN HQPQL
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