| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Apar_0546 |
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| Symbol | |
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| ID | 8413400 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Atopobium parvulum DSM 20469 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013203 |
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| Strand | + |
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| Start bp | 632060 |
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| End bp | 633271 |
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| Gene Length | 1212 bp |
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| Protein Length | 403 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 645022119 |
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| Product | integrase family protein |
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| Protein accession | YP_003179568 |
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| Protein GI | 257784351 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.849888 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.000145945 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATATTG CAGTCAAAAG ACATGGAACT TTCTGGCAAG CTCGTGTACG TTTTCGTGGA
GCTGATGGAA CCATCCAAGA AAAAAGTAAA TCTCTCGGAA TTCCCTGTGC GGCTGGAAGG
GGCAAAAAAG TTGCTCGAGC AGCTGCTGAG AAATGGGTTC AAGATGCAGG GTTTGTTGAG
GTTGTCGAAC AGAATCAAGC AACAAGGCTT GATTGTTCGG CATATACGTA TTGTCTTAAT
TACTTTAAGA GCCTTGTTGC CACACAACAA ATTGAACGTC GTACTTATAC GTCTTATAAG
AATAACGTCC GATATATTGA TTTGTTCTTT GGAGAAAAGC GACTACAAGA GATTACTGTC
ACGGATGTCG AGTTATATGT GTCTTGGCTT TATGATTCTG GCTATGCAGC TAATACGGTT
AAGAAAGCAT TTAACTCCTT CCGTGCTTGT ACGCGCCATG CTGTAGCAAT TAGAGATCTG
CAATACGATC CATGTGCGGC AATTAAAGCG CCAAAAGGTT ATCTTGCACC GCCAAATCCG
CTAAACGAAC CTTCACGCAA GAAGCTTCAA GTCATGCTTT CTGCTCTTGA GCTTTCTCCG
ATGGTACTTG CGACATACCT GGCATATTAC ACAGGTATGA GACGTGAGGA GTGTTGTGGA
CTTCAATGGA AGGACGTGAA GTTTAAAGCT GAAGATGTCA CAGCACATCT CTGTCGAGCC
ATCTCATACG ATGGCGGCAA AACCTACATT AAGGGTTTAA AAAATGGTAA AGATAGAACG
GTACCTATTC CAGCTCCGCT TGTAGACATT CTTAAGCAGT GGCGTTCTAA ATACATTGAA
GATTGTATGT TGATGGGAAT TGCGTTTAGT GAAGAGATGT ACGTTCTAGG TGACTTCTCT
GGCGAATATC TTAGACCAGA GCGAGCGACT GCATGGTGGA AGAGTCACTC TGAGGAGTGG
GGTCTTCTTG GAACGCAGGG GAGAAGACCA GTCTTTCATG ATCTGCGACA CACATATGCA
ACGATTGCAG TTAGAACTAT GGACATTAAG AGCGCACAAG ACATTCTTGG ACACAGCGAT
ATTAATATGA CAATGCGTTA TGCAGATACA GACTTGGAGC AAATTCAAAA GGCAGGGAAA
ATTATTGGAG AGGCTCTTAA CGATGCTCAC AAAGACGGTG CAGAAGTACT ACAACTTAGG
CGAGCGATAT AA
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| Protein sequence | MNIAVKRHGT FWQARVRFRG ADGTIQEKSK SLGIPCAAGR GKKVARAAAE KWVQDAGFVE
VVEQNQATRL DCSAYTYCLN YFKSLVATQQ IERRTYTSYK NNVRYIDLFF GEKRLQEITV
TDVELYVSWL YDSGYAANTV KKAFNSFRAC TRHAVAIRDL QYDPCAAIKA PKGYLAPPNP
LNEPSRKKLQ VMLSALELSP MVLATYLAYY TGMRREECCG LQWKDVKFKA EDVTAHLCRA
ISYDGGKTYI KGLKNGKDRT VPIPAPLVDI LKQWRSKYIE DCMLMGIAFS EEMYVLGDFS
GEYLRPERAT AWWKSHSEEW GLLGTQGRRP VFHDLRHTYA TIAVRTMDIK SAQDILGHSD
INMTMRYADT DLEQIQKAGK IIGEALNDAH KDGAEVLQLR RAI
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