Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jden_1926 |
Symbol | |
ID | 8381089 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jonesia denitrificans DSM 20603 |
Kingdom | Bacteria |
Replicon accession | NC_013174 |
Strand | - |
Start bp | 2106179 |
End bp | 2108245 |
Gene Length | 2067 bp |
Protein Length | 688 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 645004680 |
Product | Alpha-amylase |
Protein accession | YP_003161871 |
Protein GI | 256833144 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0366] Glycosidases |
TIGRFAM ID | |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTCGTG GTCATCGCAT GAAAAAAGGA GCAAGCGCAA TTATTGGTTT GTGTGCCAGT GCGCTCATGG CGCTCACTGT GGCACTTGTG CCGACAACAG CAGCACAAGC AGGCCCACCG CAACGCAACA ATTCCGATGT CATTTCCAAC ATGTTCCAAT GGACGTGGAA CTCTGTTGCC AGAGAATGCA CCCAAGTTCT TGGCCCTCAA GGCTACGGAT ATGTACAAGT GTCGCCACCC CAAGAGCACA TCCAAGGAAG CCAATGGTGG ACTTCCTACC AGCCCGTAAG CTACCGCATC GAATCGAAAC TCGGAACTCG GGCAGAATTC AAAGCTATGA TCACAGCCTG CAATAACGCA GGTGTCGGAG TCATAGCAGA CGCTGTCATC AACCACATGA CCGGGCAAAC TGGTGGAACC GGGTGGGCTG GCACTACCTT CTCCCTCGAG AACTACCCTG GCCCTGACGG TGGATACAGC CCTCAAGACT TCAACTCGTG CAAGCGCAAC ATCGCAAACT ACGGCGACCG GTACGAGGTG CAAAACTGCC GCCTTGTTGC ATTGCAAGAT TTAGCCACTG GAAACACCTA CGTGCGTCAA GAAATTGCAC GATACCTTGA CGACCTCGCA TCCTTGGGAG TCGCAGGATT CCGTATTGAC GCGGCCAAAC ACATTCCAGC AACAGACTTG GAAGCAATCA AAGCAGCAAC CACCCAAGCC AAAAACCTCT ATTGGATTCA TGAGGTGATC GGTGCCCCCG GTGAACCTGT CCAACCGAGT GAATACCTCG GCTCAGGAGA TTCTCACGAA TTTGGATATG GGCGAGCCCT CAAAGATGCA TTTGATGGTG ACATTGCTTC CTTGCAGAAC ATCAACAACC GTGGTTTCCT CCCATCGAAT CGCGCAGGTG TTTTTGTTGA TAACCATGAC ACTGAACGCA ACAACGAAAC AATGACTTAT CAATGGGGTG CAAAATACAA ACTGGGCAAT ATTTTTATGT TGTCTTACCC CTATGGGAGC CCCTCCACTT ACAGCGGGTA CACGTTCAGT AATAAGGACG CAGGCGCTCC CCAGAACGGT CAGGGAAAGG TCAACGACGC TGAATGCACC TCCGGTGCGT GGACCTGTGC ACACCGGTGG CCCGAAATTG CCAACATGGT GGGCTTCCAC AACACAGTCA ACGGCACAAA CCTCAGTAAC TGGCAGTCCC CAACACGGAA CGTGATCGCC TACAACCGAG GCAACAAAGG GTTTGTAGCG TTGAACAACA CCAATTCGGC GACAACCCGT GAGTTCATAA CGACCTTGCC CAACGGGCGC TACTGCAACG TTGTCGCGTC CAATACCTGC ACCCAAACGT TCACTGTCTC TGGAGGGAAA GTGTCGGTGA CGCTGCCAGC ATATGGGGCA GTGGCACTCC ACACTGGAGC GCTGGACGGT GTGACACCCG ACCCAGACCC CGACCCCACG CCGGACCCCA CCCCAGGTGA GGCCCTTACC GTGTACTACT CCACGGACAA GAACTGGAGC AACTACCGGA TTCACTACCG TGTCGGCACA GATTCGTGGA CTACTGCGCC GGGTGCTGCC ATGGCTCCAG CATGCACGGG CTGGGTCAGT GCAACAGTTC CCAGTAACGG AAGCGCGGTC ACCGCCGCGT TCAATAACGG GTCAGGAACC TGGGACAACA ACTCCGGGAA GGACTACACC TTGACCGGCT CCGTTGCTGC AGTGAAAGGT GGGGCTGTCA CAACGCACAA CCCATGCTCT GGTGGCGGCG GCTCAGCAAC ACAAGTGTTC TACTCAACCA CAGCGAACTG GAGCACCTAC AACATCCACT ACAAGGTCGA CGGCGGTTCG TGGACCTCAG TGCCTGGGGA CAGCATGACC GCAGCATGCA ACGGGTGGGT GACCCGCACA ATCGCAAGCG CGGGGAAAAA CGTCACTGCC GCGTTCAATA ACGGCTCAGG CACCTGGGAT AACAACTCGG GCAAAGACTA CACATTCAGC GGTGATGTGA TCCAAATCGC GAATGGCGCA GTCACTGCAG GTAATCCCTG CGTGTAA
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Protein sequence | MIRGHRMKKG ASAIIGLCAS ALMALTVALV PTTAAQAGPP QRNNSDVISN MFQWTWNSVA RECTQVLGPQ GYGYVQVSPP QEHIQGSQWW TSYQPVSYRI ESKLGTRAEF KAMITACNNA GVGVIADAVI NHMTGQTGGT GWAGTTFSLE NYPGPDGGYS PQDFNSCKRN IANYGDRYEV QNCRLVALQD LATGNTYVRQ EIARYLDDLA SLGVAGFRID AAKHIPATDL EAIKAATTQA KNLYWIHEVI GAPGEPVQPS EYLGSGDSHE FGYGRALKDA FDGDIASLQN INNRGFLPSN RAGVFVDNHD TERNNETMTY QWGAKYKLGN IFMLSYPYGS PSTYSGYTFS NKDAGAPQNG QGKVNDAECT SGAWTCAHRW PEIANMVGFH NTVNGTNLSN WQSPTRNVIA YNRGNKGFVA LNNTNSATTR EFITTLPNGR YCNVVASNTC TQTFTVSGGK VSVTLPAYGA VALHTGALDG VTPDPDPDPT PDPTPGEALT VYYSTDKNWS NYRIHYRVGT DSWTTAPGAA MAPACTGWVS ATVPSNGSAV TAAFNNGSGT WDNNSGKDYT LTGSVAAVKG GAVTTHNPCS GGGGSATQVF YSTTANWSTY NIHYKVDGGS WTSVPGDSMT AACNGWVTRT IASAGKNVTA AFNNGSGTWD NNSGKDYTFS GDVIQIANGA VTAGNPCV
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