Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shel_28180 |
Symbol | |
ID | 8396706 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Slackia heliotrinireducens DSM 20476 |
Kingdom | Bacteria |
Replicon accession | NC_013165 |
Strand | - |
Start bp | 3122165 |
End bp | 3123463 |
Gene Length | 1299 bp |
Protein Length | 432 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 644987557 |
Product | diaminopimelate decarboxylase |
Protein accession | YP_003145157 |
Protein GI | 257065485 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0019] Diaminopimelate decarboxylase |
TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000200142 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAAAGA AGCCGTTTGT AACGAAGGAC CAGCTCGAAG CTATTGCCGA GCAGTTCCCC ACGCCTTTCC ACCTGTACGA CGAAGCGGGC ATCCGCAAGA ATATGGAAGC TGTCCGCGAT GCCTTCGCAT GGAACCCGGG CTTCAAGGAG TATTTCGCCG TCAAGGCCAA CCCGAACCCG TTCATCATCA ACATCCTGAA GGAATACGGC TGCGGCTGCG ATTGCTCGTC GTTTACGGAG CTCATGATTT CCGAGGCGGT GGGCATTACC GGCCACGACA TCATGTTCTC GTCCAACGAC ACGCCGGCCG AAGATTTCGT GTTGGCCGAC AAGCTGGGCG CCCTGGTGAA CTTCGACGAC ATCACCCATA TCGAATTCTA CGAGCAGCTC ACCGGCCACA TTCCCGAAAC CGTATGCTGC CGTTTCAACC CGGGCGGCCT GTTCGAAATG GCAAACGGCA TTATGGACGC CCCCGGCGAT GCCAAGTACG GCATGACCGC CGACCAGTTG CGCGAAGCCT TCCGCATGTG CAAGGCCAAG GGTGCCAAGC ACTTCGGCAT CCACGCGTTT CTGGCCAGCA ACACCGTGAC CAACGAGTAC TACCCCCAGC TGGCGGGCGT GCTGTTCCAG CTCGCCGTGG ACATAGCCCG CGAAACCGAC GTGCACATCG CGTTCATCAA CCTGTCCGGC GGCGTGGGCG TGGCCTACAG CCCCGACCAG GAGCCCAACG ACATTCGGGC CATTGGCGAA GGCGTCCGCC GCGTGTACGA CGAGGTTCTG GTACCGGCGG GCATGGGCGA CGTCGCCATT TACACCGAGA TGGGCCGTTT CATGCTGGCG CCTTACGGAT GCCTGGTCAC ACGTGCCATC CACGAGAAGC ATACCTATAA GGAATACATC GGCGTCGACG CCAACGCGGT GAACCTCATC CGCCCGGCCA TGTACGGCGC GTACCATCAC ATCACCGTCG CAGGAAAGGA GGATGCGCCG TGCGATCACG TGTACGACGT GGTCGGTAAC CTGTGCGAAA ACAACGACAA GTTCGCCGTT GACCGTTCGC TGCCGGAGAT CGAGATGGGC GACCTGCTGG TCATCCACGA TGCCGGTGCC CATGGACACG CCATGGGCTA CAACTACAAC GGCCGCTTGA AGTCCGCGGA GGTGCTTCTG CAGACGGATG GCACGCCGAA GCTCATCCGC CGCGCCGAGC GACCCTCCGA TTACTTCGCC ACCCTCGACT GCTTCGAAAT CGGCACGAAA CTCCAGACCA TCGCGCAGCG GGAAACCCCG CAGGCGTAA
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Protein sequence | MEKKPFVTKD QLEAIAEQFP TPFHLYDEAG IRKNMEAVRD AFAWNPGFKE YFAVKANPNP FIINILKEYG CGCDCSSFTE LMISEAVGIT GHDIMFSSND TPAEDFVLAD KLGALVNFDD ITHIEFYEQL TGHIPETVCC RFNPGGLFEM ANGIMDAPGD AKYGMTADQL REAFRMCKAK GAKHFGIHAF LASNTVTNEY YPQLAGVLFQ LAVDIARETD VHIAFINLSG GVGVAYSPDQ EPNDIRAIGE GVRRVYDEVL VPAGMGDVAI YTEMGRFMLA PYGCLVTRAI HEKHTYKEYI GVDANAVNLI RPAMYGAYHH ITVAGKEDAP CDHVYDVVGN LCENNDKFAV DRSLPEIEMG DLLVIHDAGA HGHAMGYNYN GRLKSAEVLL QTDGTPKLIR RAERPSDYFA TLDCFEIGTK LQTIAQRETP QA
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