Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shel_05680 |
Symbol | |
ID | 8394460 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Slackia heliotrinireducens DSM 20476 |
Kingdom | Bacteria |
Replicon accession | NC_013165 |
Strand | + |
Start bp | 661444 |
End bp | 662454 |
Gene Length | 1011 bp |
Protein Length | 336 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 644985330 |
Product | sortase family protein, LPXTG-site transpeptidase |
Protein accession | YP_003142976 |
Protein GI | 257063304 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3764] Sortase (surface protein transpeptidase) |
TIGRFAM ID | [TIGR01076] LPXTG-site transpeptidase (sortase) family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.781628 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCCTGA ACCTGAAACA TATTGATTGG AAAATGGCTG CGTTGGTGGT CTTCTTCCTT ATTGGCATCG GGATCATGCT CTATCCATTC GTGTGCAACG CCTACTACCA GTATCAGGCC GACAAGTGGA TGGACGAATA CTCCGCAGTC ATCGAAGATG GTGACAACGA GGAATACGCC CAGGCCATTG CCGAAGCCCA GGAATACAAC CAGGTATTGG TTGGTCAGAC GGTTCCGGAC GTCTTCGCTA TTCGCGAAGG CACCACCGAT AAAACGTACG AAAGCATGCT CAACGTGCTT GGCAACCAGA TCATGGGCTC GATTGAGATT CCTGTTATCG ATGTGAACCT GCCCATCTAC CACTACTCGA CCGTCGAGTC GTTGGAGATG GGCTGCGGAC ACATCTTCGG CAGCAGTCTG CCCGTGGGCG GTGACAGTTC GCATGCGGTC ATTACGGCCC ACCGCGGCTT GCCGACTGCG AAGATGTTTA CCGACCTGGA CCAGCTTGAA AAGGGCGACA AGTTCTACCT CCACATTCTG GACCAGACGC TGGCGTACGA AGTCATCGAG ACCGAAACCG TGGCGCCCGA TGAGACCCGT TCGCTCGCCA TCCAAGAAGG CGAGGACCTG GTCACGCTGG TTACGTGCAC GCCTTACGGC GTCAACACGG ACCGCCTGCT GGTGCACGCG CAGCGTGTTC CTTACGAACC TGGTGACGAG AACGCGCCGG TCAAGCACCA CATGTCGTCG GTTATCGCCA ACCTGCTCAA GGGTGCATGC ATCCTGGCCG GTGTTCTGGC TGCGACCATT CTGGCTTGGG TGCTGCGCAA GCGCCGCGAA CATGCGCGTA GATTGGCGGA ATACTCCGTC GGATCGCGTG ACGGTGCTGC AGTGGGCGCA GCGTCTGAGA CGGATGCACA CGAGAACGAG AACGTGTTCT ACGAGGTGGA CATGCCTCGG ACGAACGACG GTCCTTTGGG TACAACCAAC TGGAGGAACC TAGATGAGTA A
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Protein sequence | MTLNLKHIDW KMAALVVFFL IGIGIMLYPF VCNAYYQYQA DKWMDEYSAV IEDGDNEEYA QAIAEAQEYN QVLVGQTVPD VFAIREGTTD KTYESMLNVL GNQIMGSIEI PVIDVNLPIY HYSTVESLEM GCGHIFGSSL PVGGDSSHAV ITAHRGLPTA KMFTDLDQLE KGDKFYLHIL DQTLAYEVIE TETVAPDETR SLAIQEGEDL VTLVTCTPYG VNTDRLLVHA QRVPYEPGDE NAPVKHHMSS VIANLLKGAC ILAGVLAATI LAWVLRKRRE HARRLAEYSV GSRDGAAVGA ASETDAHENE NVFYEVDMPR TNDGPLGTTN WRNLDE
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