Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Coch_1767 |
Symbol | |
ID | 8368213 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Capnocytophaga ochracea DSM 7271 |
Kingdom | Bacteria |
Replicon accession | NC_013162 |
Strand | - |
Start bp | 2104767 |
End bp | 2106155 |
Gene Length | 1389 bp |
Protein Length | 462 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 644984207 |
Product | MATE efflux family protein |
Protein accession | YP_003141873 |
Protein GI | 256820594 |
COG category | [V] Defense mechanisms |
COG ID | [COG0534] Na+-driven multidrug efflux pump |
TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCCTAT CAAGTTATAC AAAAGAATTC AAATACAACT TTAAAATTGC TTACCCCATC ATATTAGGAA TGCTCGGGCA CACCCTTGTT GGGTTCGTAG ATAATGTAAT GGTAGGTAAA GTAGGTATTA CCGAACTCGG AGCTGCTGCT CTGGGTAATA CCGCTATATT CATTGCAATG TCGTTTGCCA TTGGTTTTTC TGTTGCTAGT ACTTCCTTAG TAGCAATGGC TGATGAAGCA GGTGATAAAC CAACTGCTCA GTCTATTCTC AATCACGGAA TGGTACTCAA TGTAATATTA GGAGTAGTAC TCTTCCTTTT ATTGTTTTTT GTAGAACCTG TGATGCGCTA TACAGGACAA AGCGAGAAAG TAATAGAGTT GGCAGTACCC TACACCCATT TGGTAGCTTT TTCGCTTATT CCATTGGGTG TTTTCACTAC CTTCAAGCAG TTTGCCGATG GCTTATCAAT GACCAAATAT GCTATGTATG TTACTATCTT AGCAAACTTG CTAAACGTCT TTCTAAACTA TCTTTTTATT TATGGTAATT GGGGTTGCCC GAAATTAGGA GTGTTAGGCG CTGGTATTGG CACCTTAGTA TCACGAATTG TAATGCCTAT AATGCTTTTC TTTATGCTGA AAAACTTAGA GAAGTCGCGT GAATATGTTA TGAGTATCAG TTTTAAGAAT ATGCAACAAG CAATGTACAA AAAGATAACT GCTCTCGGAC TCCCTACCGC TATGCAAATG ATTTTTGAAA CAGGTATCTT TACCGCAGCT ATTTGGATAA GCGGTATGCT GGGCGAAAAT CATTTATCAG CAAACCAAAT TGCGCTCAAC TTATCGAGTA TGACTTTTAT GGTTGCTAAT GGCTTAGGAA TTACCGCTAT GATACGTGTA GGAAATCAAT TAGGAGCGAG AAACTATGCT AATTTGCGTA GAGTAGCTAT TTCGGTATTT CTGTTAGTAC TCTGCACACA AGTATTTTTT GCCCTTCTTT TAGCGGTATT TCGCACTTGG TTACCGTCAT TGTACTTAGA GATGGATAAC ATAGAAAAAT TAGCTAATAA TACTCTAGTA ATAGGCGAAG CTACCAATCT CTTGCTCATT GCAGCTATTT TTCAAATATC CGATGGAATG CAAGTAACAG CTCTTGGTGC CTTACGTGGA GTACAAGATG CTAAAGTGCC TATGTACATC ACTTTTGTAG CCTATTGGCT GATTGCCTTC CCTATTCTTT ATGTGTTAGG CGTTCATACC AATTTAGGTA CTATGGGTAT TTGGATTGGC TTGCTCACCG GTCTCACAGT CGCTGCTGTT TGTCTTTTGT ATAGGTTTAA CCGTATCAGC TTACAACTGA TAGCCAACAG ACACCAATAT ACTTCTTAA
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Protein sequence | MSLSSYTKEF KYNFKIAYPI ILGMLGHTLV GFVDNVMVGK VGITELGAAA LGNTAIFIAM SFAIGFSVAS TSLVAMADEA GDKPTAQSIL NHGMVLNVIL GVVLFLLLFF VEPVMRYTGQ SEKVIELAVP YTHLVAFSLI PLGVFTTFKQ FADGLSMTKY AMYVTILANL LNVFLNYLFI YGNWGCPKLG VLGAGIGTLV SRIVMPIMLF FMLKNLEKSR EYVMSISFKN MQQAMYKKIT ALGLPTAMQM IFETGIFTAA IWISGMLGEN HLSANQIALN LSSMTFMVAN GLGITAMIRV GNQLGARNYA NLRRVAISVF LLVLCTQVFF ALLLAVFRTW LPSLYLEMDN IEKLANNTLV IGEATNLLLI AAIFQISDGM QVTALGALRG VQDAKVPMYI TFVAYWLIAF PILYVLGVHT NLGTMGIWIG LLTGLTVAAV CLLYRFNRIS LQLIANRHQY TS
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