| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_1614 |
|---|
| Symbol | |
|---|
| ID | 8368060 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Capnocytophaga ochracea DSM 7271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013162 |
|---|
| Strand | + |
|---|
| Start bp | 1922721 |
|---|
| End bp | 1923515 |
|---|
| Gene Length | 795 bp |
|---|
| Protein Length | 264 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644984054 |
|---|
| Product | diaminopimelate epimerase |
|---|
| Protein accession | YP_003141720 |
|---|
| Protein GI | 256820441 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0253] Diaminopimelate epimerase |
|---|
| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGAAAT TCTACAAATA TCAAGGAACA GGGAACGATT TTGTGATGAT AGACAATCGC
AAAGGGGTAT TTCCTAAAAA TAACGAAACG CTTGTGGCAC AATTGTGTCA TAGGCGTTTT
GGTATTGGAG CCGATGGATT GATATTGCTT GAGGACGACC CGCAGTATGA TTTCCGTATG
GTGTATTACA ATTCTGACGG GCGTGAAAGT ACGATGTGTG GCAATGGGGG GCGCTGTGTG
GTGGCTTTTG CGAAACAATT GGGTATTATA GAACACGAAA CGCTATTTAT AGCTGTAGAT
GGGGAGCATC GTGCTACGAT TGAAGGGGAT AGCTACGTGC GCTTGCAAAT GAAAAATGTA
ACTGAGGTAG AAGAACACAA AGGCTACGTA TTCTTAAATA CAGGGTCGCC TCACCACGTG
CAATGGGTGG AAGAGGTAGA TGCCGTAGAC GTGAAAAGCG AAGGAGCTAC TATACGCTAT
GGAGAACTTT ATGCTACTCA GGGCGGTAGT AACGTGAATT TTGTGAGCAA AGGAGAGAAA
GGCTTTAAAG TGCGCACCTA TGAGCGCGGA GTGGAAGATG AAACTTACTC TTGCGGTACA
GGGGTTACAG CCGTAGCGAT TGCTCTTTAT CACATAGGAG AAACCGATGC ACAACAGATT
ACCCTGCACA CTCGAGGAGG TGACTTGCAA GTGGCTTTCG ATAGAGTAGG AGAGGGGTAT
GAGAATATCT ATTTGAGTGG TAGTGCTCAA TTCGTGTTTG ACGGAACAAT AGAGGAGTTA
AAAGGTAAAG AATGA
|
|---|
| Protein sequence | MMKFYKYQGT GNDFVMIDNR KGVFPKNNET LVAQLCHRRF GIGADGLILL EDDPQYDFRM
VYYNSDGRES TMCGNGGRCV VAFAKQLGII EHETLFIAVD GEHRATIEGD SYVRLQMKNV
TEVEEHKGYV FLNTGSPHHV QWVEEVDAVD VKSEGATIRY GELYATQGGS NVNFVSKGEK
GFKVRTYERG VEDETYSCGT GVTAVAIALY HIGETDAQQI TLHTRGGDLQ VAFDRVGEGY
ENIYLSGSAQ FVFDGTIEEL KGKE
|
|---|
| |