Gene Coch_1164 details

Gene Information

• Locus tag: Coch_1164
• Symbol: rpsE
• ID: 8367586
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Capnocytophaga ochracea DSM 7271
• Kingdom: Bacteria
• Replicon accession: NC_013162
• Strand: +
• Start bp: 1378953
• End bp: 1379477
• Gene Length: 525 bp
• Protein Length: 174 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 644983590
• Product: 30S ribosomal protein S5
• Protein accession: YP_003141278
• Protein GI: 256819999
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0098] Ribosomal protein S5
• TIGRFAM ID: [TIGR01021] ribosomal protein S5, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.00523189
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTATCAGA AATATAAAAA TGTAGAATAT GTAAAACCAA GTGGTTTGGA ATTGAAAGAC 
CGTTTGGTAG GAGTACAACG TGTTACTAAA GTAACTAAAG GTGGTCGCGC TTTCGGTTTC 
TCTGCTATCG TTGTAGTAGG CGACGAAAAC GGCGTGGTTG GTCACGGTTT AGGAAAATCT 
AAAGAGGTTT CTGAAGCTAT TGCTAAAGCA GTAGAAGACG CTAAGAAAAA CTTAGTGCGT 
ATCCCTCTTA ACGGTACTAC CTTGCCCCAC GAACAAAAAG GAAAATACGG CGGAGCTCGT 
GTTTTCTTAC AACCAGCTAC CGAAGGTACC GGAGTAATCG CAGGTGGTAC TGTACGTGCC 
GTATTGGAAT CCGTAGGTAT CCATAACGTA CTTTCTAAAT CACAAGGTTC TTCTAATCCT 
CACAACGTGG TAAAAGCTAC TTTCGATGCT TTATTGCAGT TGCGTAGCGC TAAAACTGTT 
GCTGCTCAAC GTGGCATCTC TTTAGAAAAA TTGTTTAAAG GTTAA 

 

Protein sequence

MYQKYKNVEY VKPSGLELKD RLVGVQRVTK VTKGGRAFGF SAIVVVGDEN GVVGHGLGKS 
KEVSEAIAKA VEDAKKNLVR IPLNGTTLPH EQKGKYGGAR VFLQPATEGT GVIAGGTVRA 
VLESVGIHNV LSKSQGSSNP HNVVKATFDA LLQLRSAKTV AAQRGISLEK LFKG