| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_0129 |
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| Symbol | rpsA |
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| ID | 8366531 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Capnocytophaga ochracea DSM 7271 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013162 |
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| Strand | + |
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| Start bp | 149083 |
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| End bp | 150843 |
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| Gene Length | 1761 bp |
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| Protein Length | 586 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 644982548 |
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| Product | 30S ribosomal protein S1 |
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| Protein accession | YP_003140255 |
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| Protein GI | 256818976 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0539] Ribosomal protein S1 |
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| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00811703 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTGAAA ACACTCAAAA TCCAGAAGAG TTCTTACAGA ACTTTGATTG GGACAAATAC
CAAGAAGGTA TTGACAGCGT ACAAGAAGAC CAATTGAAAA ACTTCGAAGA ATTGGTTAAA
AACAATTTCG TTGACACTCA AGACAATGAA GTAGTAGAAG GAGTAGTAAC TCGTATCACT
GACAGAGAAG CGATTATCGA CATCAACGCT AAATCAGAAG GCGTTATCTC TCTCAACGAG
TTTCGCTACA ACCCGAACCT CAAAGTAGGT GACAAAGTAG AAGTGCTTAT CGATATCCGT
GAGGATAAAA ACGGTCAGTT AGTACTTTCA CACCGCAAAG CACGTACGCT TAAAGCTTGG
GATAGAATTA ACTTGGCACA CGAAAACGGC GAAATCGTAA ACGGTTTTGT AAAAAGCCGT
ACCAAAGGCG GTATGATAGT AGATGTATTT GGCATCGAAG CATTCTTACC TGGTTCACAA
ATCGATGTGA AACCTATCCG CGATTACGAA CAATTCGTAA ACAAAACAAT GGAATTCAAG
ATTGTGAAAG TAAATCACGA GTTCAAAAAC GTAGTGGTTT CTCACAAAGC GCTCATCGAA
GCAGATATCG AAGAACAGAA GAAAGAAATC ATCAGTCAGC TCGAAAAAGG ACAAGTACTC
GAAGGAGTTG TGAAAAATAT CACTTCTTAC GGTGTATTTG TAGACCTTGG TGGCGTAGAC
GGATTGATTC ACATCACCGA CCTTTCTTGG GCTCGTATCA ATCACCCAAG CGAAGTGGTA
TCGGTAGACC AAAAACTCAA TGTGGTAATC CTCGATTTCG ACGACAACAA ATCACGTATC
CAATTAGGTT TAAAACAGCT TAGCAAACAC CCTTGGGACG CTCTTGCTGA CGACCTTAAA
GTAGGCGATA AAGTAAAAGG TAAAGTAGTG GTGATTGCCG ACTACGGTGC TTTTGTAGAA
ATTGCTGATG GTGTAGAAGG TCTTATCCAC GTTTCTGAAA TGTCTTGGAG TACTCACTTG
CGTTCTGCTC AAGATTTCGT AAAACTCGGC GACGAAGTAG AAGCTGTTAT CTTGACTCTC
GACCGCAACG AGCGCAAAAT GTCTTTGGGT ATTAAACAAC TTACCCCAGA CCCTTGGATT
AACATTACTG AAAAATATCC AGTAGGTTCT AAACATACAG GTACTGTTCG CAATTTCACT
AATTTCGGTG TATTCGTAGA ACTCGAAGAA GGTATCGATG GTCTTATACA CATCACCGAC
CTTTCTTGGA CTAAGAAAAT TAAACACCCA TCAGAATTTG TAAACTCTGG TGATAAGATT
GAAGTAGTAG TACTTGAATT AGATGCCGAA GGACACAAAT TGTCATTAGG GCACAAGCAA
ACCACTCCTA ACCCTTGGGA CAAATACGAA ACTGAATTTG CCGTAGGTAC AGTTCACAAA
GGTACTATTT CTAAAATGGT AGATAAAGGT GCTACAGTTC CTCTCAACGA CGATATCTTA
GCGTTTGTTC CTTCACGTCA CTTAGAAAAA GAAGACGGAA AGAAATTAGG TAAAGGAGAC
ACTGCTGATT TCAAAGTAAT TGAGTTCAAT AAAGAATTTA AACGTGTAGT AGCTTCTCAC
ACTGCTATCT TCAAAGAAGA AGAAGAGAAA ATAGCTAAAG AAGCTGCTGT AAATACCAGC
TCATCTACAG TCGAAAAATC AACACTTGGT GACCTTGAAG CGTTACAAGA GTTGAAAGAC
AAGATGGAAA AAGAGAAGTA A
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| Protein sequence | MAENTQNPEE FLQNFDWDKY QEGIDSVQED QLKNFEELVK NNFVDTQDNE VVEGVVTRIT
DREAIIDINA KSEGVISLNE FRYNPNLKVG DKVEVLIDIR EDKNGQLVLS HRKARTLKAW
DRINLAHENG EIVNGFVKSR TKGGMIVDVF GIEAFLPGSQ IDVKPIRDYE QFVNKTMEFK
IVKVNHEFKN VVVSHKALIE ADIEEQKKEI ISQLEKGQVL EGVVKNITSY GVFVDLGGVD
GLIHITDLSW ARINHPSEVV SVDQKLNVVI LDFDDNKSRI QLGLKQLSKH PWDALADDLK
VGDKVKGKVV VIADYGAFVE IADGVEGLIH VSEMSWSTHL RSAQDFVKLG DEVEAVILTL
DRNERKMSLG IKQLTPDPWI NITEKYPVGS KHTGTVRNFT NFGVFVELEE GIDGLIHITD
LSWTKKIKHP SEFVNSGDKI EVVVLELDAE GHKLSLGHKQ TTPNPWDKYE TEFAVGTVHK
GTISKMVDKG ATVPLNDDIL AFVPSRHLEK EDGKKLGKGD TADFKVIEFN KEFKRVVASH
TAIFKEEEEK IAKEAAVNTS SSTVEKSTLG DLEALQELKD KMEKEK
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