Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_31590 |
Symbol | |
ID | 8388483 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | + |
Start bp | 3426186 |
End bp | 3426875 |
Gene Length | 690 bp |
Protein Length | 229 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644977186 |
Product | channel protein, hemolysin III family |
Protein accession | YP_003134959 |
Protein GI | 257057127 |
COG category | [R] General function prediction only |
COG ID | [COG1272] Predicted membrane protein, hemolysin III homolog |
TIGRFAM ID | [TIGR01065] channel protein, hemolysin III family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGAGCGTAG CGACGCACAA ACAGAACGAA GCAACACCGT CCGACGTCGT CGACACCCGT CCGCGGCTTC GTGGGCACAT CCACTTCTGG AGTTTCTTCG GCGCGGTCGC GGCGGGTGCC ACGCTGATCG CCCTGGCCGC GTCGACCGTG TCGGGGCTCG CCGCCCTGGC GACGTCGATC TACGGGGTCA CGGTGCTCGG CGTGTTCGGG GTCAGCGCCT TGTACCACCG GCGGATCTGG AGCCCCAAGG CGTACGCGTG GATGAAACGC GCCGACCACT CGATGATCTT CCTGTTCATC GCGGGCACCT ACACGCCGTT CACACTGTTG GCGATGTCCC AGCCGACCGG GTACGTCGTG CTCGGCGTGG TGTGGGGTGG CGCGGTCGCG GGTGTCGCGT TGAAGATGTT GTGGCCGACG GCGCCGCGTT GGCTCGGCGT GCCCATCTAC ATCGCGCTGG GCTGGGTCGC GATCTTCGTG CTGCCGGAGC TGGCGCACAA CGCGGGCGTG GCGGCGCTGG TGTTGCTGCT CGTCGGCGGG GCCCTCTACA CGGTGGGGTC GGTTTTCTAC GCCACCCGTT GGCCGAACTA CTGGCCCAAG ACCTTCGGGT ACCACGAGTT CTTCCACGCG TGCACGGTGG CGGCGGCCAT CACGCACTAC ATCGCGATCT GGCTGGCCAT GTACGCCTGA
|
Protein sequence | MSVATHKQNE ATPSDVVDTR PRLRGHIHFW SFFGAVAAGA TLIALAASTV SGLAALATSI YGVTVLGVFG VSALYHRRIW SPKAYAWMKR ADHSMIFLFI AGTYTPFTLL AMSQPTGYVV LGVVWGGAVA GVALKMLWPT APRWLGVPIY IALGWVAIFV LPELAHNAGV AALVLLLVGG ALYTVGSVFY ATRWPNYWPK TFGYHEFFHA CTVAAAITHY IAIWLAMYA
|
| |