Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_27860 |
Symbol | |
ID | 8388110 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | + |
Start bp | 3017059 |
End bp | 3017559 |
Gene Length | 501 bp |
Protein Length | 166 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 644976817 |
Product | peptide deformylase |
Protein accession | YP_003134594 |
Protein GI | 257056762 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
TIGRFAM ID | [TIGR00079] peptide deformylase |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.0522307 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTGATGC GTGACCTGCG ATACTTCGGC GATCCGGTGC TGAAGTCGCC CGCGGACCCG GTGACGACGT TCGACGACTC GATTCGAGCG CTGGTGGACG ACCTGCTCGA CACGGTGAAC CTCCCCGGTC GGGCCGGACT GGCGGCGCCC CAGATCGGCG TGGGACTGCG CGCCTTCAGC TACAACGTGG ACGGCTCCAT CGGCTACGTG CTCAACCCCG AGCTCGTCGA GTTGTCCGAG GAGAAGCACG AGGTCATGGA GGGTTGCCTG TCCCTTCCCG GGCTGTCGTT CACCACGGTG CGGGCCCAGC GGGCGACGGT CAAAGGGGTG GATCTGCGCA ACGAGCCGGT CACCGTGTCC GGTTCGGGAT TGCTGGCTCA GTGCCTGCAA CACGAGGTCG ATCACCTCGA CGGCCTGTTG TACATCGACC GTCTCGAGCC GCAGCAGCGG AAGCAGGCGC TGCGCGAGGC CAGGGGCAAA GACTGGTTCT GGTCGCGTTA G
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Protein sequence | MVMRDLRYFG DPVLKSPADP VTTFDDSIRA LVDDLLDTVN LPGRAGLAAP QIGVGLRAFS YNVDGSIGYV LNPELVELSE EKHEVMEGCL SLPGLSFTTV RAQRATVKGV DLRNEPVTVS GSGLLAQCLQ HEVDHLDGLL YIDRLEPQQR KQALREARGK DWFWSR
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