Gene Svir_00040 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_00040 
SymbolrecF 
ID8385342 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp4827 
End bp5999 
Gene Length1173 bp 
Protein Length390 aa 
Translation table11 
GC content68% 
IMG OID644974110 
Productrecombination protein F 
Protein accessionYP_003131925 
Protein GI257054093 
COG category[L] Replication, recombination and repair 
COG ID[COG1195] Recombinational DNA repair ATPase (RecF pathway) 
TIGRFAM ID[TIGR00611] recF protein 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000332989 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.373412 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTATCTGC GGCACCTCCA GGTGACCGAT TTCCGGTCGT GGGAGCACGT GGATCTCCCG 
CTCGCACAGG GACCCACCGT GCTGGTGGGC CCCAACGGGC AGGGAAAGAC CAACCTGCTC
GAGGCCATCG GATACATCTC CACGTTGAGT TCGCATCGGG TGGCCACGGA CGCACCGTTG
GTGCGACACG GTTGTGATCG CGCGTTGGTA CGTGCCGCGG TGGTGAACGA GGGACGGGAA
CTCACCGTCG AGCTGGAGAT CGCACCGGGC CGGGCCAACC GCGCTCGGAT CAACCGCGGC
GCGGTCGGCA AACCACGTGA CGTGCTCGGC ATCCTTCGGA CGGTGTTGTT CTCCCCGGAG
GATCTGGCAC TCGTGCGCGG TGATCCCTCC GAACGACGGC GGTTCCTGGA CGACCTGCTC
GTACAACGCG CTCCGCGATA CGCGGGGGTC CGTTCGGAAT ACGACCGTGT GCTGCGGCAG
CGCAACGCCT TGTTGAAGAG CGTGGGTCGC GCCGGTGGGC GTCGGGGAGC CCGGGAGGAG
ACCGATCCGT ACGCGTTGTC CACGCTTCAG GTGTGGGACA ACCACCTGGC TTCCGCGGGG
GCCGAGTTGT TGGCAGCGCG GCTCAATCTG GTCGCCGAGC TGGGGCCCTA TGTGGCTTCG
TCCTATGCGG ACGTGGCTCC CGACTCCCGA CCTGCCCGGA TCGCCTACCG CTCCAGCCTG
GGGGGTGCGT TGCCGGAGGG TTGGGGGACG CCCGACGGAC CGGAAGCGTC GACGGAGCAG
CTCGGCGAGA TCCTGCTCCG GGTGCTCGGT GAGGTCCGGG AGACCGAGCT GGAGCGCGGG
GTGAGTCTCA TCGGGCCGCA CCGGGACGAT CTCGAGTTGA TGTTGGGCGA GGCCCCCGCG
AAGGGTTATG CGAGCCACGG GGAGTCGTGG TCGTTCGCGT TGGCGCTACG ACTAGCGTCG
TATCGGCTCT TGCGGAACGA GTCGGGCGGT GAACCGGTGC TGCTGTTGGA CGACGTGTTC
GCCGAGCTCG ACAGCAGGCG TCGGGCCCGA TTGGCCGAGG TGGCGACGAA GGCCGAGCAG
GTGTTGGTGA CGGCGGCCGT CGACGAGGAC GTACCCGTCG AATTCGCAGG CGTACGGTAT
GCGGTCTCGA ACGGCGAGGT GACACGTGCC TGA
 
Protein sequence
MYLRHLQVTD FRSWEHVDLP LAQGPTVLVG PNGQGKTNLL EAIGYISTLS SHRVATDAPL 
VRHGCDRALV RAAVVNEGRE LTVELEIAPG RANRARINRG AVGKPRDVLG ILRTVLFSPE
DLALVRGDPS ERRRFLDDLL VQRAPRYAGV RSEYDRVLRQ RNALLKSVGR AGGRRGAREE
TDPYALSTLQ VWDNHLASAG AELLAARLNL VAELGPYVAS SYADVAPDSR PARIAYRSSL
GGALPEGWGT PDGPEASTEQ LGEILLRVLG EVRETELERG VSLIGPHRDD LELMLGEAPA
KGYASHGESW SFALALRLAS YRLLRNESGG EPVLLLDDVF AELDSRRRAR LAEVATKAEQ
VLVTAAVDED VPVEFAGVRY AVSNGEVTRA