| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_6404 |
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| Symbol | |
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| ID | 8362588 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 8046645 |
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| End bp | 8048585 |
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| Gene Length | 1941 bp |
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| Protein Length | 646 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 644968532 |
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| Product | DNA ligase D |
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| Protein accession | YP_003126009 |
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| Protein GI | 256425356 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0822092 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGGCCA CATTGGTTGA TCATCCTGTG GATACACCCG GCTGGCTGTA TGAAGTAAAA
TGGGATGGCT ATCGCGCAAT TGCCCTGCTG AACAAAGGCG GCATTCAACT GATCTCCCGT
AACAACAAAT CATTCGACGA GAAATTCTAC CCCGTCTTCC ATGCACTGGA AGCCTGGAAG
ATTAACGCCA TCCTTGACGG TGAAATAGTC GTGCTGACCC CAGATGGTAT CTCCCGCTTC
GCTGATCTTC AGAACTGGCG GAGTGAGGCC GACGGTGAAC TGATCTACTA TGTATTCGAT
CTTTTGTGGC TGAATGGGTA CGATCTTACA CAACTTCCCC TCATTCAGCG ACGGGAGCTA
CTGGAAAGCC TGTTTCCTGC GCCTGATATC ATCCGGCTCA GCACCGCCTT CAGAGATACC
TCCTCAGCAG AATTTCTTTC CGCGGCCAAG TCACTCGGAC TGGAAGGCAT CATTGCCAAA
AAAGAAGACA GTATTTATCA TACAGGTCTC CGTAGCCGGG ATTGGTTAAA GATTAAAATC
AATAAACGAC ATGAAGTCGT CATTGGCGGT TATACGCGTA ATGAAAACTC TTCCAAACCA
TTTAGCTCTT TGCTCGTAGG TGTATTTGAA AAGGGCAAGT TTCAGTATAC GGGAAAGATA
GGCACCGGCT TTACCAGCGC CCAACAAAAG GAAATGCTGC AGGCATTCAA ACCCCTGATC
AGAAAAACAT CTCCTTTCAG TACTGTACCT GATATCAACA AACCTTCCCG CTTCCGTCCG
AACCCGCCAA AGGCAACAGC CGTCTGGCTA AGTCCTCAAC TGGTATGTGA AGTGAGTTAT
GCCGAAATCA CGGCTGATGG TGTCATGCGT CACCCCTCTT TCGAAGGTAT GCGTATAGAC
AAGACGGCAA AAGAAGTGGG AAAAGAAGAA GCCATGCCTG TCGCCAAGGT TGTAAAAGAA
GCGGCTGGCG CTATCTCGCA ACAAATGCTG ACACCTGTTG TTGGTGGTGA CCGCAAAACA
CTATTGAACC CCTCTGAAGC CACTCAGGTA CGAAAAGTCA GCAAACATGA ACTGAAATTC
TCCAATCTTA ATAAAGTCTT CTGGCCGGAA GAAAAGTATA CCAAACGGGA TATGCTGAAT
TACTACTATC AGGTAGCGCC TTACATATTG CCTTACCTGA AAGACCGGCC ACAATCGCTT
AACAGATTTC CAAACGGTAT TAAAGGCAAA AGCTTCTATC AGAAAGATGT AACGGGTAAA
GCGCCTGACT GGATCAAAAC CTTCCCCTAT CATACCAATG ATGGAGAAGA CAAAAACTTT
ATGGTACCCA CTGATGAAGC CAGTCTGCTC TACATGGCCA ATCTGGGTGC TATCGAAATG
AATCCCTGGA ACAGTAAGAT CAGTAAACCT GATTATCCTG ATTGGTGTAT TATTGATCTG
GATCCAACAG AAAAGAATAC CTTTGAGCAG GTAATCAGAA CCGCACAGGT TACAAAAGAG
ATATTAGACA GCATTAAAGT TCCAGGCTAT TGCAAAACAT CCGGCTCTAC CGGCATACAT
ATCTACATTC CTTTAAACGC AAAATATACA TACGAAGATT GTCAGTTGTT CGGCAAATGG
ATTGCCTCCC AGGTACATCA GCAACTTCCT TCTTTTACAA GTATTGAACG CATGACGCAG
AACAGAAAGG GCAAAATATA TGTTGATTAT CTACAGAACA GGCCAAAGGC TACGCTTGCA
GCCCCTTACT CCCTGCGCCC AAAACCAGGT GCAACGGTCT CCATGCCGCT ACATTGGGAC
GAAGTAAAGA AGGGACTTAA AATGAAAGAC TTCAATATTA CCAACGCCAT CGCCCGTATC
AGCGAAATGG GGGACATCTT TAAACCGGTA CTTGGCAAAG GGATTGATAT GAAAAAAATA
CTACGGTCTA TACGGCCGTA A
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| Protein sequence | MLATLVDHPV DTPGWLYEVK WDGYRAIALL NKGGIQLISR NNKSFDEKFY PVFHALEAWK
INAILDGEIV VLTPDGISRF ADLQNWRSEA DGELIYYVFD LLWLNGYDLT QLPLIQRREL
LESLFPAPDI IRLSTAFRDT SSAEFLSAAK SLGLEGIIAK KEDSIYHTGL RSRDWLKIKI
NKRHEVVIGG YTRNENSSKP FSSLLVGVFE KGKFQYTGKI GTGFTSAQQK EMLQAFKPLI
RKTSPFSTVP DINKPSRFRP NPPKATAVWL SPQLVCEVSY AEITADGVMR HPSFEGMRID
KTAKEVGKEE AMPVAKVVKE AAGAISQQML TPVVGGDRKT LLNPSEATQV RKVSKHELKF
SNLNKVFWPE EKYTKRDMLN YYYQVAPYIL PYLKDRPQSL NRFPNGIKGK SFYQKDVTGK
APDWIKTFPY HTNDGEDKNF MVPTDEASLL YMANLGAIEM NPWNSKISKP DYPDWCIIDL
DPTEKNTFEQ VIRTAQVTKE ILDSIKVPGY CKTSGSTGIH IYIPLNAKYT YEDCQLFGKW
IASQVHQQLP SFTSIERMTQ NRKGKIYVDY LQNRPKATLA APYSLRPKPG ATVSMPLHWD
EVKKGLKMKD FNITNAIARI SEMGDIFKPV LGKGIDMKKI LRSIRP
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