| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4941 |
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| Symbol | |
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| ID | 8361117 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | - |
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| Start bp | 6178331 |
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| End bp | 6179590 |
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| Gene Length | 1260 bp |
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| Protein Length | 419 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 644967090 |
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| Product | efflux transporter, RND family, MFP subunit |
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| Protein accession | YP_003124575 |
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| Protein GI | 256423922 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.321445 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.921537 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAGAA AGATCGTCAT TACAATAATA GTACTGGTGG CCGCACTTGC CATCTGGTAC
TTCTTTTTCC GCAAAAAGGA AAATCAGGTG GTGATCAGTA CGCAAAAACC AAGATATGGT
CATATATCCA CCAGTGTGAC TGCCACAGGA ACCGTTCAGC CGGTGGATAC CGTTGCCGTA
GGTACACAGG TCTCCGGTAT TATCAAATAT ATCTACACGG ATTTTAATCA GCCGGTAAAG
AAGGGGCAGT TGCTGGCAGA ACTGGATAAG GTATTGCTGC AGGCAGAAGT AGACAGGAAT
AGAGGCGCAC TGGCGAATGC GCAAAGTCAG CTGATATATC AGCAGGCACA ATACAAAAGA
CAAGACCAGT TATATAAAGT AGGGGCTATC AGCAGAGCGG ATTATGACAA TGCGACGTAT
CTGAATAAGG CGGCCCAGGC AAGTGTGGAA AGTGCAGGCG CTTCTCTGCG GACGGCGGAA
AGGAACCTCT TTTTTACAGA GATCTATTCT CCTATAGATG GCGTAGTACT CAACAGGAGC
GTGAGTGTTG GTCAGACGGT AGCTGCCAGC TTCAATACGC CTACTTTGTT CGTACTGGCG
AAAGACATCA CCAAAATGCA GGTACAGGCC AGTGTGGATG AAGCAGATAT CGGTAATGTA
CAGGATAGTC AGCGCGTATC TTTTACGGTG GATGCGTATC TGGATGAAGA ATTTGCGGGA
AAGGTACAGG AGATCCGCTT ACGGCCGTCG GTATCCGCTA ATGTGGTGAC TTATACCACT
ATGATCAGTG CCTCCAATGA AAGTATGAAA CTGAAACCGG GTATGACGGC GACAGTGACG
ATCTATACGT CAGAGAAAGA TCATGTAATG CTTATTCCGT CAAAGGCATT GATGTTTAAA
CCGGATTCTG CATTGTCAGG ACAGTTTAAA GTGATCGCTG TAGCACCGGC GGCAACAGAG
CGCAGGAAGA GTGCGACACC GGTAACAGGA GGCAGCAGGG ATACCGTCAG AAGTAATATG
CCGGGAATGG AGAAGAAGCC ATCAGCCGCA TCCAACTATG TATGGGTAAG ACAGGGAGAT
ACTCTCTTGC AGAAAAAGGT GGTAATTGGA TTGAATGATA ACACCCGCGC AGAGGTGATT
GCAGGTTTGT CACCCGAGGA AGATGTCATC ACCGGTATGC AGGAACTGAG CGGTAAAAAA
GGCACAACAG GCAGTGGCGG ACAAGCCAGT CCCTTCATGC CGCAAAGAAG AAGACGATGA
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| Protein sequence | MKRKIVITII VLVAALAIWY FFFRKKENQV VISTQKPRYG HISTSVTATG TVQPVDTVAV
GTQVSGIIKY IYTDFNQPVK KGQLLAELDK VLLQAEVDRN RGALANAQSQ LIYQQAQYKR
QDQLYKVGAI SRADYDNATY LNKAAQASVE SAGASLRTAE RNLFFTEIYS PIDGVVLNRS
VSVGQTVAAS FNTPTLFVLA KDITKMQVQA SVDEADIGNV QDSQRVSFTV DAYLDEEFAG
KVQEIRLRPS VSANVVTYTT MISASNESMK LKPGMTATVT IYTSEKDHVM LIPSKALMFK
PDSALSGQFK VIAVAPAATE RRKSATPVTG GSRDTVRSNM PGMEKKPSAA SNYVWVRQGD
TLLQKKVVIG LNDNTRAEVI AGLSPEEDVI TGMQELSGKK GTTGSGGQAS PFMPQRRRR
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