Gene Cpin_4788 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCpin_4788 
Symbol 
ID8360964 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChitinophaga pinensis DSM 2588 
KingdomBacteria 
Replicon accessionNC_013132 
Strand
Start bp5960672 
End bp5961016 
Gene Length345 bp 
Protein Length114 aa 
Translation table11 
GC content43% 
IMG OID644966938 
Producttranscriptional regulator, XRE family 
Protein accessionYP_003124423 
Protein GI256423770 
COG category[K] Transcription 
COG ID[COG1396] Predicted transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000000200631 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value0.763075 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCAGA TTACTTTCGG CAAAAGGCTT ACTGAGGTGA GGAAAGACAA AAAACTATCT 
CAGGACGAGA TAGCTAAAAA GGTAGGCGTA CATGGGGCTG TCATTGGCAG GTATGAACGG
GATGAAGTAA AACCCTCTAT TGAGATGGCC GCCAATATCG CTGCCGCGCT GGAAGTCTCA
TTAGACTATC TCGTTGGTAA CACTGATCTA CTTCTGGACC AGACTATCCT CGACAGGATT
ATGGATATTC AAAAACTAAG TGACCAGGAT AAAGCAGATG CCTTTAAACT ACTGGATATG
TTCCTTCGTG ACGCAAAGGC CAGACATGCT TATCATAAAC AATAA
 
Protein sequence
MKQITFGKRL TEVRKDKKLS QDEIAKKVGV HGAVIGRYER DEVKPSIEMA ANIAAALEVS 
LDYLVGNTDL LLDQTILDRI MDIQKLSDQD KADAFKLLDM FLRDAKARHA YHKQ