| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_4623 |
|---|
| Symbol | |
|---|
| ID | 8360796 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chitinophaga pinensis DSM 2588 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013132 |
|---|
| Strand | + |
|---|
| Start bp | 5770042 |
|---|
| End bp | 5771511 |
|---|
| Gene Length | 1470 bp |
|---|
| Protein Length | 489 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644966777 |
|---|
| Product | transcriptional regulator, GntR family with aminotransferase domain |
|---|
| Protein accession | YP_003124265 |
|---|
| Protein GI | 256423612 |
|---|
| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.609617 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.250213 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATAGTC CGGTTGAGAT ACCATTTAAA AGCTTTATCC AGATAGAACG TGCTTCTCAC
ATTCCTATTT ATATACAAAT AGCGAATCAT CTGACGCAGG CGATACAGTC CGGGACCCTC
TTACCTGGTA CCAAACTGCC CGGCGCCAGG ACTTTAAGCG AGCTTTTACA GGTACATCGG
AATACGATCA CCTCGGTATA CGAGGAATTG TATGCCCAGG GCTGGATAGA CGTTAAACCC
AACCGGGGAG CAGTAGTGAT GCCGCGTTTG CCCAAAATAA AGGGGCGAAC GACAGAAAGT
CATGGTTATC CGGCAACGAC CGGCTTTTCC TTTATAACAA CCCCGCTTCT GGATAATCCG
TTTGACTATG CCCCCTGTGA CTATGTATTT AACGATGGCG TACCTGACAT CCGGCTCACG
CAGATCGATG ACCTCTCCCG TTTGTATAGC GCCAATATGA AGCGCAAAAG CAACCAGAAG
AAAATGAGTT ATTATAACCA GGAAGGCAGC AGGTATTTTA AGGAGCAGTT ATCTCAGTAT
CTCCGGCTTT CCCGTGGATT CAAAATATCT ATCAATAACC TGCTGATCAC GCGGAGTATT
GAAATGAGCC TGTTCATCAT TTCCGAAATC ATTCTGCGAC AGGGAGATTA TGTGGTAGTC
GGTGCGCCCA GTTATTTTGC CGCCAATATG ATCTTCCAGA AATCCAGCAA CCGGGTATTA
ACTATACCTA CTGATGATGA AGGACTGAAT ACTGACGCCC TGGAAGAATT ATGCAATAAA
CATCTTATCA GACTGGTATA TGTTACCCCA CAGCATCACT ATCCTACTAC GGTTAGTTTA
AGCGCCCGGA GACGTATGGC CTTGTTACAA CTGTCAAAGA AATTTGGATT TGTCATTGTG
GAAGATGATC ATGATTATGA CTTTCACTAT GACAAACAAC CACTACTCCC ACTGGCAACA
GTAGATACCG CAGGTATGGT GATCTATGTA AGTTCGTTTG GGAAGTCTCT TGCACCGGGC
TTCCGTACCG GATTTGTCGT AGCGCCGGAA AATCTGATGG TAGAAATGCG TAAATACCTG
GGTATCATAG ACCGTCAGGG AGATGTGATG ATCGAGCAGG CTTTAGGAGA AATGATTGAA
GAAGGCGCTA TTCAGCGGCA TATGAAACGA TCCCTGAAGA TCTACAAAGA ACGCAGGGAT
TATATGTCTG AATTGCTGGA AAAACACCTC GGCGAATGGC TCTCCTTTCA GAAGCCCACG
GGTGGACTCG CCTTCTGGCT CTCTTTCCGG CAACCGGTTA ACCTGATGCG GCTAAAAAAA
CTGTGTGAGA AAAATAATCT CTTTATTCCG AGAACACTGC TTTATCAGAA TAAAGACGTA
ACTGCTTTGC GGATTGGTTT CGGGCATCTG GATCAGGAAG AAATGAATAA AACGGTGGAT
ATTCTGAGGC AGTCGATAAG CGAGTTATAA
|
|---|
| Protein sequence | MNSPVEIPFK SFIQIERASH IPIYIQIANH LTQAIQSGTL LPGTKLPGAR TLSELLQVHR
NTITSVYEEL YAQGWIDVKP NRGAVVMPRL PKIKGRTTES HGYPATTGFS FITTPLLDNP
FDYAPCDYVF NDGVPDIRLT QIDDLSRLYS ANMKRKSNQK KMSYYNQEGS RYFKEQLSQY
LRLSRGFKIS INNLLITRSI EMSLFIISEI ILRQGDYVVV GAPSYFAANM IFQKSSNRVL
TIPTDDEGLN TDALEELCNK HLIRLVYVTP QHHYPTTVSL SARRRMALLQ LSKKFGFVIV
EDDHDYDFHY DKQPLLPLAT VDTAGMVIYV SSFGKSLAPG FRTGFVVAPE NLMVEMRKYL
GIIDRQGDVM IEQALGEMIE EGAIQRHMKR SLKIYKERRD YMSELLEKHL GEWLSFQKPT
GGLAFWLSFR QPVNLMRLKK LCEKNNLFIP RTLLYQNKDV TALRIGFGHL DQEEMNKTVD
ILRQSISEL
|
|---|
| |