| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cpin_3588 |
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| Symbol | |
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| ID | 8359755 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chitinophaga pinensis DSM 2588 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013132 |
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| Strand | + |
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| Start bp | 4470233 |
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| End bp | 4473193 |
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| Gene Length | 2961 bp |
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| Protein Length | 986 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 644965758 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_003123252 |
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| Protein GI | 256422599 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00353353 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.00053116 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAAAAA GGGGAATATT CCTGACAGCA TTGCTGTTGG CACTGTGGAG TTTTGCTATG
GCACAGCAGG ACGTCACAGT AAAGGGACAC ATACAGGACA AGCAGGGCAA CTCTCTTCCC
GGCGTTTCCA TCAAGATCAA AGGAACAGCT AAAGGCACGG CCAGCCAGCC AGATGGTAAC
TTTACCATTC AGGCGCCTTC CAACGCCATA CTGGAACTGT CTTACGTGGG CTACGAAACA
CAGGACTTTT CATTAGAGGG CCGTACCCAG GTCACCATTA CCCTGTCTGA CACCAAAACA
GATCTGAGCG AAGTAGTGGT TATCGGTTAC GGTACCCAGA AAAAGAAAGA TGTTACTACA
GCCGTAGTCG CTGTTAATAC CAAAGATATC GCTGAGCGTC CGATTACACA GACGGCTGCC
GCCCTCCAGG GTAAAGCTGC CGGTGTGCAG GTAACGCAGC CTTCCGGTAA ACCGGGCTCC
GCATTCTCAG TAAGAGTGCG TGGTGCGACT TCCGTACAGG CGGGTAACGA ACCTTTATAT
GTGATCGATG GTGTGCCAAC CACCGATACA AGGGATCTGA ATACCAATGA TATCGCTACT
ATTACCGTAC TGAAAGATGC TTCCAGCGCC GCTATCTATG GTGCAAGAGC ATCCAATGGC
GTGGTACTGA TCACCACCAA GAGAGGTCGT TCCGGTGATG CGGTGATCAA CTTCAATACT
TATTATGGTG TATCTAAGAT CGGTAAGAAG ATCGACGTAC TGGATCCTAC ACAATATAAT
GACCTGATGA AGGAAATGGG TTTCAACGTA GTAACGCCTA CGGTGACTAC CAACTGGCTG
GATGAAGTAT TCCAGACGGG TCGTAACCAG AACTATCAGT TATCAGCTTC CGGTGGTAGT
GAGAAATCTC AGTATTTCAT CTCCGGCGCT TATACCAAAG ATGACGGTAT GGTTAAACCT
GCGGAATATA ACCGCCGCGT TTTCCGTGCT AACCTGGACA ATCAGCTGAA ACCATGGATG
AAACTGACCA CTAACATCAG CTACTCCAAT GTGGATCTGA AAGATGTAAA GGATAATGCA
AACGCAGGTC GTAACGCAGC GATCCTGGGA GCACTGAATG CGCCTCCGAT CATCGGTATC
TATGAGACAG ATGCAGACGG TCACCAGCGC TATACCATGA ACCCATATAA ATCCGGTTGG
GATAACCCGC TGGCGGCTAT TGAAGGTCCG ACGCAAGGTA CAAAAGACAA CCGTATACTG
GGTAATGCCG CGCTGGACAT CAATTTCACC AAAGATCTGA AGTTCCGGAC CAACTATGGT
ATCGACTATA CCAATCACCA ATACGACTAT TACCTGGATT ATATCATGAC CACTCCGGGC
CGTCTGGACC ATGGTTATGC TACCTCCCAG CGTTATAATA CAACGACCTG GCTTTGGGAA
AATACCCTGA ACTATGACAA AAGCTGGAAG AAACACAATC TCTCCGCTTT GGGAGGTGTG
ACTTCTCAGA AGAACAATTA CGCTGAAACT AATCAGACAG GTCGTGATTT CCCTGCTGAT
CCGACTGTAA AAACGCTGAA CGCCGCTAAC CAGATCACAG GCGATACCAG AGAATCCCAG
TGGTTCCTGA TGTCTTACCT GGCGCGTGTG ATGTATAACT ATGACAGCAG GTATCTGTTG
ACGGTTAACT TCCGTGCGGA TGGTTCTTCC AAACTGGATA AAAAACATAA ATGGGGTTAC
TTCCCGTCTG TATCTGCCGG CTGGCGTATT TCTTCCGAGC CGTTTATGCA GGACGTGAAA
GCGATTAATG ACCTGAAATT AAGAGCGGGC TGGGGACAGA ACGGTAACGT AGAAGGGCTG
AGTCCATATG CGTCCCTGGG TCTGAATAAT TTCGTTCGTC AGACGCCGAC AAGTCCGCTG
TCAGGTCCTG GTATCACCCT GCCTGCAGGT GCGCCGAACC CGGATCTGAA ATGGGAAACC
ACTACACAGA CCAACGTTGG TATCGACCTG AGTCTCTTTG AATCCCGTCT GACTTTCTCT
GCTGATGCGT ACATCAAAAA GACAAAAGAT CTGCTGTTAA ATGTACCATT CCCACGTTCA
GCGGAATACC AGTATATGCC GCGTAACTCC GGTGCACTGG AGAACAAAGG TCTGGAGTTC
CTGGTTTCTT CTGTGAACGT TGATAAGGTT GACGGACTGC GTTGGAGCAC TGATTTCAAT
ATCGCTTTCA ACCGTAACCG TCTGACTGAT CTGCAACTGA CACAGGTATA TAACTATGCT
GCGCCAGAGA ACAGAGATTT TATCATCACA CTGAGAAAAG GACTGCCACT GGGTACTTTC
TACGGATATG TAGCAGAAGG GGTTGATCCT AAGACAGGAG ACATGGTGTA TAAAGATGTA
AATGGTGATG GTAATGTAAC GCCTACCGAC CGTACTGTGA TCGGTAATGC ACAGCCTACT
TTCACTTATG GTCTGAACAA TAACCTGTCT TATAAAAGCT GGTCATTCTC ATTCCTGTTC
CAGGGTTCTC AGGGTAATGA AGTGTTCAAC GCCTCCCGTA TGGAAACAGA AGGTATGTAC
GACAGCAAGA ACCAGTCTAC CGAAGTACTG CGCCGCTGGA CAGCAGCTGG TCAGGTAACT
GACATCCCAC GTGCTACCAA CGGTGATGTC ACCAACTCCC GTACTTCTTC CCGTTTCGTA
GAAAATGGTT CCTTCCTGCG TATGAAGAGT GCAACACTCT CTTACAATCT GCCGAGGAGT
GCATTGTCTG CTATGCACAT CAGCCGACTG ATGGTATATG CTACTGCACA GAACCTGTTT
ACTATTACCA AATACCAAGG TTTTGATCCG GAAGTGAATG CTTACTCAGG TGATCCTGCG
AATGGTGTAA CACTGGGTAT TGACTACGGT ACTTATCCGG TAGCAAGAAC TTATGTCCTT
GGTTTAAACC TGTCCTTCTA A
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| Protein sequence | MKKRGIFLTA LLLALWSFAM AQQDVTVKGH IQDKQGNSLP GVSIKIKGTA KGTASQPDGN
FTIQAPSNAI LELSYVGYET QDFSLEGRTQ VTITLSDTKT DLSEVVVIGY GTQKKKDVTT
AVVAVNTKDI AERPITQTAA ALQGKAAGVQ VTQPSGKPGS AFSVRVRGAT SVQAGNEPLY
VIDGVPTTDT RDLNTNDIAT ITVLKDASSA AIYGARASNG VVLITTKRGR SGDAVINFNT
YYGVSKIGKK IDVLDPTQYN DLMKEMGFNV VTPTVTTNWL DEVFQTGRNQ NYQLSASGGS
EKSQYFISGA YTKDDGMVKP AEYNRRVFRA NLDNQLKPWM KLTTNISYSN VDLKDVKDNA
NAGRNAAILG ALNAPPIIGI YETDADGHQR YTMNPYKSGW DNPLAAIEGP TQGTKDNRIL
GNAALDINFT KDLKFRTNYG IDYTNHQYDY YLDYIMTTPG RLDHGYATSQ RYNTTTWLWE
NTLNYDKSWK KHNLSALGGV TSQKNNYAET NQTGRDFPAD PTVKTLNAAN QITGDTRESQ
WFLMSYLARV MYNYDSRYLL TVNFRADGSS KLDKKHKWGY FPSVSAGWRI SSEPFMQDVK
AINDLKLRAG WGQNGNVEGL SPYASLGLNN FVRQTPTSPL SGPGITLPAG APNPDLKWET
TTQTNVGIDL SLFESRLTFS ADAYIKKTKD LLLNVPFPRS AEYQYMPRNS GALENKGLEF
LVSSVNVDKV DGLRWSTDFN IAFNRNRLTD LQLTQVYNYA APENRDFIIT LRKGLPLGTF
YGYVAEGVDP KTGDMVYKDV NGDGNVTPTD RTVIGNAQPT FTYGLNNNLS YKSWSFSFLF
QGSQGNEVFN ASRMETEGMY DSKNQSTEVL RRWTAAGQVT DIPRATNGDV TNSRTSSRFV
ENGSFLRMKS ATLSYNLPRS ALSAMHISRL MVYATAQNLF TITKYQGFDP EVNAYSGDPA
NGVTLGIDYG TYPVARTYVL GLNLSF
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